Browse Element(s) Details


Os.12110.1.S1_at

Description gb:AK064985.1
DB_XREF= gi:32975003
TID=Os.12110.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001C20, full insert sequence.
FL= gb:AK060741.1 gb:AK119514.1 gb:AK064985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0261011/11RPT2, putative, expressed
LOC_Os12g0253011/11RPT2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02550Os.52895.1.S1_x_at6/1111+800633..804507expressed protein
LOC_Os11g02550Os.9085.1.S1_at5/1111+800633..804507expressed protein
LOC_Os11g02570Os.48066.1.S1_at1/1111+811089..812334hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02580Os.53907.1.S1_at10/1111+812847..814796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02590OsAffx.22759.1.S1_at6/1111+815731..818034retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02600Os.25109.1.S1_at11/1111+820017..821956expressed protein
LOC_Os11g02610Os.12110.1.S1_at11/1111+822425..824753RPT2, putative, expressed
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein
LOC_Os11g02650OsAffx.24949.3.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02650OsAffx.24949.1.S1_x_at1/1111+849435..850267fringe protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009638biological_processphototropism
GO:0005634cellular_componentnucleus
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12110.1.S1_at--664--9052Chr12:860703..860727 (25 bp)
TGCAGGCCGTGCTGAGCGCGCTCTA
LOC_Os12g02530
Os.12110.1.S1_at--63--6652Chr12:860429..860453 (25 bp)
GTTGAGCCGGCTGAACCCGTTCAAG
LOC_Os12g02530
Os.12110.1.S1_at--891--2152Chr12:860385..860409 (25 bp)
ACACGTCGGGCATCGTCGACGGGAA
LOC_Os12g02530
Os.12110.1.S1_at--821--5752Chr12:860368..860392 (25 bp)
GACGGGAAGACGGACGCCATGAATT
LOC_Os12g02530
Os.12110.1.S1_at--372--4432Chr12:860353..860377 (25 bp)
GCCATGAATTCCGTCAAGTCCAAGA
LOC_Os12g02530
Os.12110.1.S1_at--474--972Chr12:860326..860350 (25 bp)
AGGAGGTTCTCCATTAGCTAGGCTA
LOC_Os12g02530
Os.12110.1.S1_at--887--1552Chr12:860311..860335 (25 bp)
AGCTAGGCTAGCTTAGTGTTGAGAT
LOC_Os12g02530
Os.12110.1.S1_at--695--9512Chr12:860275..860299 (25 bp)
TCTCGTGCTAGCTACATATATGCGT
LOC_Os12g02530
Os.12110.1.S1_at--1063--7872Chr12:860224..860248 (25 bp)
GGTTATTCGCAAGAAACATGACTGT
LOC_Os12g02530
Os.12110.1.S1_at--580--5732Chr12:860205..860229 (25 bp)
GACTGTTCTTGTGTAGTCTACTGTA
LOC_Os12g02530
Os.12110.1.S1_at--763--10312Chr12:860178..860202 (25 bp)
TTGTAAGTTTGTGTCCGCAAAAACG
LOC_Os12g02530
Target Sequence 
TGCAGGCCGTGCTGAGCGCGCTCTACTACGACCGGCTCAAGCTCCGCAGCGGAGACGAGGGCGGCGGCGGGTGGGACGCG
TATGGGAATGGCGTGATGAGGTCGTCGGCGGCGGGGTCGGCGAGGAAGCAGGCGAAGGAGGAGGCGTCGCTGGCGAGGGA
GAACGAGGCGCTGCGGTCGGAGCTGGCGCGGATGCGGGCGTACGTGTCGGGGATGCAGCAGCAGAGCAAGGGGTCGTCGT
CGTCGAGGGGGAAGAAGGGCTCGTGGTTGCGGACGTTGAGCCGGCTGAACCCGTTCAAGGCCGGCATCTGGGGCAAGGAC
ACGTCGGGCATCGTCGACGGGAAGACGGACGCCATGAATTCCGTCAAGTCCAAGAGGAGGAGGTTCTCCATTAGCTAGGC
TAGCTTAGTGTTGAGATGATCCATGTCATCTCGTGCTAGCTACATATATGCGTTGTCAATGACTGTATATTGATTGATTG
GTTATTCGCAAGAAACATGACTGTTCTTGTGTAGTCTACTGTAAATTGTAAGTTTGTGTCCGCAAAAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis