Browse Element(s) Details


Os.17196.1.A1_s_at

Description gb:BI812351
DB_XREF= gi:16578256
DB_XREF=E002D12
CLONE=E002D12
TID=Os.17196.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17196 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0263011/11expressed protein
LOC_Os12g0255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02570Os.48066.1.S1_at1/1111+811089..812334hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02580Os.53907.1.S1_at10/1111+812847..814796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02590OsAffx.22759.1.S1_at6/1111+815731..818034retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02600Os.25109.1.S1_at11/1111+820017..821956expressed protein
LOC_Os11g02610Os.12110.1.S1_at11/1111+822425..824753RPT2, putative, expressed
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein
LOC_Os11g02650OsAffx.24949.3.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02650OsAffx.24949.1.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02660Os.26742.1.S1_at11/1111+850566..854102hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02670Os.10542.1.S1_s_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02670Os.51389.1.S1_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17196.1.A1_s_at--89--5512Chr12:875727..875751 (25 bp)
GAACACAACCGGTGATTGAGAGCGA
LOC_Os12g02550
Os.17196.1.A1_s_at--223--3312Chr12:875724..875748 (25 bp)
CACAACCGGTGATTGAGAGCGAGTA
LOC_Os12g02550
Os.17196.1.A1_s_at--407--1772Chr12:875720..875744 (25 bp)
ACCGGTGATTGAGAGCGAGTATGTT
LOC_Os12g02550
Os.17196.1.A1_s_at--678--1192Chr12:875703..875727 (25 bp)
AGTATGTTGCATAGATGTTTTCTTG
LOC_Os12g02550
Os.17196.1.A1_s_at--589--9812Chr12:875529..875553 (25 bp)
TAACACATTCTTTTAACAGTTTTGT
LOC_Os12g02550
Os.17196.1.A1_s_at--755--6652Chr12:875473..875497 (25 bp)
GTTGATGTTCATAATTGCCATGTTC
LOC_Os12g02550
Os.17196.1.A1_s_at--160--6752Chr12:875467..875491 (25 bp)
GTTCATAATTGCCATGTTCATAGTG
LOC_Os12g02550
Os.17196.1.A1_s_at--1115--8072Chr12:875441..875465 (25 bp)
GGAGCTCTTTTCATCTCCAAGCAAG
LOC_Os12g02550
Os.17196.1.A1_s_at--221--5912Chr12:875440..875464 (25 bp)
GAGCTCTTTTCATCTCCAAGCAAGC
LOC_Os12g02550
Os.17196.1.A1_s_at--514--7452Chr12:875394..875418 (25 bp)
GTGTCAGATTTGGAATCCCTTATTT
LOC_Os12g02550
Os.17196.1.A1_s_at--257--3432Chr12:875390..875414 (25 bp)
CAGATTTGGAATCCCTTATTTTTTG
LOC_Os12g02550
Target Sequence 
GAACACAACCGGTGATTGAGAGCGAGTATGTTGCATAGATGTTTTCTTGACATTTCAGCNGAATTCAGGCAACAAGGGTA
ACCNGTNATGCNNGCAAGCATGGNATTGCTCTTCGGTCGGATGAGGCAACAAGTGTTCCATATCAATGAGTGCGGCACAA
ATTGCTAGATGTAGGNCATAGTCTTGGCTCATGAGNCTTAACACATTCTTTTAACAGTTTTGTTTGGAGGGTTATTTGTT
CTGCNATGGCTNNTGTTGATGTTCATAATTGCCATGTTCATAGTGGGGAGCTCTTTTCATCTCCAAGCAAGCNATNGGGA
AGAAATGGTTGTNGTGTCAGATTTGGAATCCCTTATTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17196.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis