Browse Element(s) Details


Os.50540.1.S1_at

Description gb:AK121697.1
DB_XREF= gi:37991320
TID=Os.50540.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072G17, full insert sequence.
FL= gb:AK121697.1 gb:AK108947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0263011/11expressed protein
LOC_Os12g025502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02570Os.48066.1.S1_at1/1111+811089..812334hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02580Os.53907.1.S1_at10/1111+812847..814796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02590OsAffx.22759.1.S1_at6/1111+815731..818034retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02600Os.25109.1.S1_at11/1111+820017..821956expressed protein
LOC_Os11g02610Os.12110.1.S1_at11/1111+822425..824753RPT2, putative, expressed
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein
LOC_Os11g02650OsAffx.24949.3.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02650OsAffx.24949.1.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02660Os.26742.1.S1_at11/1111+850566..854102hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02670Os.10542.1.S1_s_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02670Os.51389.1.S1_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50540.1.S1_at--534--10852Chr12:875763..875787 (25 bp)
TTGGGAGGTCACAAGCGCCTGTAGC
LOC_Os12g02550
Os.50540.1.S1_at--925--7871Chr11:837119..837143 (25 bp)
GGTTATTTGTTCTGCAATGGCTCAT
LOC_Os11g02630
Os.50540.1.S1_at--1036--10791Chr11:837113..837137 (25 bp)
TTGTTCTGCAATGGCTCATGTTGAT
LOC_Os11g02630
Os.50540.1.S1_at--10--9131Chr11:836983..837007 (25 bp)
TGCTGTATTCAAAAGGATATGGGCT
LOC_Os11g02630
Os.50540.1.S1_at--707--10372Chr12:875317..875341 (25 bp)
TTTTATTGTGCATTTCATTTTGCTA
LOC_Os12g02550
Os.50540.1.S1_at--745--7072Chr12:875287..875311 (25 bp)
GTGAAATTCGTTCAAGCTTAAGCGA
NONE
Os.50540.1.S1_at--603--3212Chr12:875275..875299 (25 bp)
CAAGCTTAAGCGATTTCGTTTTTGT
NONE
Os.50540.1.S1_at--335--9392Chr12:875260..875284 (25 bp)
TCGTTTTTGTGTATTTTGGCTCCTC
NONE
Os.50540.1.S1_at--604--8772Chr12:875251..875275 (25 bp)
TGTATTTTGGCTCCTCATGTTTAGA
NONE
Os.50540.1.S1_at--680--4792Chr12:875242..875266 (25 bp)
GCTCCTCATGTTTAGAGACCTTGTA
NONE
Os.50540.1.S1_at--1148--5472Chr12:875228..875252 (25 bp)
GAGACCTTGTAAGGTACAATTGTAC
NONE
Target Sequence 
TTGGGAGGTCACAAGCGCCTGTAGCACTGGGGACAAGAACACAACCGGTGATTGAGAGCGAGTATGTTGCATAGATGTTT
TCTTGACATTTCANCGGAATTCAGGCAANNNNNNNNNNNNNNNNNNNNNNNNNGCATGGGATTGCTCTTCGGTCGGATGA
GGCAACNAGTGTTCCATATCAATGAGTGCNGCACNAATTGCTAGATGTANGGCATANTCTTGGCTCNTGAGACTTAACAC
ATTCTTTTAACAGTTTTGTTTGGAGGGTTATTTGTTCTGCAATGGCTCATGTTGATGTTCATAATTGCCATGTTCATAGT
GAGGAGCTCTTTTCATCTCCAAGCAAGCAATGGGGAAGAAATGGTTGTTGTGTCAGATTTGGAATCCCTTATTTTTTGGA
TTGCTGTATTCAAAAGGATATGGGCTTGGCAATAAAGGTGAGGGAATTTTATTGTGCATTTCATTTTGCTACTTCAGTGA
AATTCGTTCAAGCTTAAGCGATTTCGTTTTTGTGTATTTTGGCTCCTCATGTTTAGAGACCTTGTAAGGTACAATTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis