Browse Element(s) Details


Os.25109.1.S1_at

Description gb:AK105536.1
DB_XREF= gi:32990745
TID=Os.25109.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H03, full insert sequence.
FL= gb:AK105536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0260011/11expressed protein
LOC_Os12g025207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02550Os.52895.1.S1_x_at6/1111+800633..804507expressed protein
LOC_Os11g02550Os.9085.1.S1_at5/1111+800633..804507expressed protein
LOC_Os11g02570Os.48066.1.S1_at1/1111+811089..812334hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02580Os.53907.1.S1_at10/1111+812847..814796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02590OsAffx.22759.1.S1_at6/1111+815731..818034retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02600Os.25109.1.S1_at11/1111+820017..821956expressed protein
LOC_Os11g02610Os.12110.1.S1_at11/1111+822425..824753RPT2, putative, expressed
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25109.1.S1_at--308--1512Chr12:858146..858170 (25 bp)
AGCACCTGGAATTGACCTGGCGTCT
LOC_Os12g02520
Os.25109.1.S1_at--624--5831Chr11:820663..820687 (25 bp)
GACCTGGCGTCTATTCATGTTTATT
LOC_Os11g02600
Os.25109.1.S1_at--1032--6811Chr11:820494..820669 (25 bp)
GTTTATTCTGACATTTGGCTGCCTC
LOC_Os11g02600
Os.25109.1.S1_at--184--652Chr12:857883..857907 (25 bp)
ATGCAGCCAATTTACTTGGGATGCC
LOC_Os12g02520
Os.25109.1.S1_at--402--992Chr12:857735..857759 (25 bp)
AGGAGGTTGCCTTCTTTGGCAGCTT
LOC_Os12g02520
Os.25109.1.S1_at--934--10832Chr12:857720..857744 (25 bp)
TTGGCAGCTTTTCCCTGAAGGAGCA
LOC_Os12g02520
Os.25109.1.S1_at--278--392Chr12:857657..857681 (25 bp)
ATCACCATCCACATTAAGCTTACTT
LOC_Os12g02520
Os.25109.1.S1_at--536--3311Chr11:820152..820176 (25 bp)
CACTTAAGGTGTCTGGAATGCTGAG
LOC_Os11g02600
Os.25109.1.S1_at--451--5992Chr12:857604..857628 (25 bp)
GAGACTCAAAGTGGTGTTTCCCTTC
LOC_Os12g02520
Os.25109.1.S1_at--15--8632Chr12:857598..857617 (20 bp)
TGGTGTTTCCCTTCTTTGTATATGA
LOC_Os12g02520
Os.25109.1.S1_at--549--1831Chr11:820025..820049 (25 bp)
ACGTGTAAGGCCCTAATGCCGGTCT
LOC_Os11g02600
Target Sequence 
AGCACCTGGAATTGACCTGGCGTCTATTCATGTTTATTCTGACATTTGGCTGCCTCANTCGATAAAGGAANATCACCTTC
AATTTGTGGATAAATGGATGCAACAACATATTGATGATGCAGCCAATTTACTTGGGATGCCAATTGTGGTTGGGGAGTTT
GGGGTATCAGTTAAGGACGGGAAGTTTGGTAANGAATTCCGTGAAGATTTCATGAAGACAATTTACAGAATTTTCTTGAG
TTCTTGGAAGGAAGGAGTGATTGGAGGAGGTTGCCTTCTTTGGCAGCTTTTCCCTGAAGGAGCAGAGCACATGGATGATG
GTTATGCAGTTATNTTTGCAAAATCACCATCCACATTAAGCTTACTTGCAAATCACTTAAGGTGTCTGGAATGCTGAGAC
TCAAAGTGGTGTTTCCCTTCTTTGTATATGATAGTGTCTGNTTTACTATATTTGTAAAGCAAAGACCATTCTGTAAAGTC
GAACAAATGNTTTAATTTTAACGTGTAAGGCCCTAATGCCGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis