Browse Element(s) Details


OsAffx.19458.1.S1_at

Description tigr:9640.m00154
TID=OsAffx.19458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0248011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02450OsAffx.30783.1.S1_at11/1112+823302..824540WRKY DNA binding domain containing protein
LOC_Os12g02460Os.34131.1.S1_s_at10/1112+828515..830650hAT family dimerisation domain containing protein
LOC_Os12g02470Os.7502.2.S1_at10/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02470OsAffx.30784.1.S1_at7/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02470OsAffx.30784.1.S1_s_at3/1112+833236..837755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02490Os.52895.1.S1_x_at11/1112+843208..847289expressed protein
LOC_Os12g02490Os.9085.1.S1_at9/1112+843208..847289expressed protein
LOC_Os12g02480OsAffx.19458.1.S1_at11/1112+846960..847693hypothetical protein
LOC_Os12g02500Os.48066.1.S1_at11/1112+853005..854382hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g02510Os.53907.1.S1_at4/1112+855275..856433hypothetical protein
LOC_Os12g02520Os.25109.1.S1_at7/1112+857268..859498expressed protein
LOC_Os12g02530Os.12110.1.S1_at11/1112+860146..862519RPT2, putative, expressed
LOC_Os12g02540Os.14454.1.A1_at11/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540Os.56849.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540OsAffx.28871.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19458.1.S1_at--493--8212Chr12:846992..847016 (25 bp)
GGAATCGCACCTTTCTTGCGCAGAT
LOC_Os12g02480
OsAffx.19458.1.S1_at--914--10312Chr12:847003..847027 (25 bp)
TTTCTTGCGCAGATCCTCCGGAACT
LOC_Os12g02480
OsAffx.19458.1.S1_at--1036--552Chr12:847015..847039 (25 bp)
ATCCTCCGGAACTGGTCATTCAAGA
LOC_Os12g02480
OsAffx.19458.1.S1_at--957--7132Chr12:847029..847053 (25 bp)
GTCATTCAAGACTGGATCATCCTTT
LOC_Os12g02480
OsAffx.19458.1.S1_at--279--9732Chr12:847034..847058 (25 bp)
TCAAGACTGGATCATCCTTTGCCTC
LOC_Os12g02480
OsAffx.19458.1.S1_at--919--10692Chr12:847052..847076 (25 bp)
TTGCCTCCTTCTGTTGGGCGGGCGA
LOC_Os12g02480
OsAffx.19458.1.S1_at--1092--10812Chr12:847065..847089 (25 bp)
TTGGGCGGGCGAGTCCTCAAAGAAA
LOC_Os12g02480
OsAffx.19458.1.S1_at--116--2792Chr12:847088..847112 (25 bp)
AAGAGGCAAGAACCGACAGTGGCAA
LOC_Os12g02480
OsAffx.19458.1.S1_at--994--5152Chr12:847093..847117 (25 bp)
GCAAGAACCGACAGTGGCAAGGTGA
LOC_Os12g02480
OsAffx.19458.1.S1_at--632--9772Chr12:847231..847532 (25 bp)
TAATGGGCAGGCCAAAGGCAGTCAA
LOC_Os12g02480
OsAffx.19458.1.S1_at--932--912Chr12:847638..847662 (25 bp)
AGGCAGTCAAGCTCAATTCCATTGG
LOC_Os12g02480
Target Sequence 
GGAATCGCACCTTTCTTGCGCAGATCCTCCGGAACTGGTCATTCAAGACTGGATCATCCTTTGCCTCCTTCTGTTGGGCG
GGCGAGTCCTCAAAGAAAGAGGCAAGAACCGACAGTGGCAAGGTGAGGAAAAGAAGTGGATTTTCGTGGGGGCGGGGCGC
ACAGGGAAGGGAAGCAAAGCAGAGCAGGAGGAGTCTAGGAGGGAGGAAGAGAAGAGAAGGTTAATATACCAGGGGCCATT
AATGGGCAGGCCAAAGGCAGTCAAGCTCAATTCCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis