Browse Element(s) Details


OsAffx.30784.1.S1_at

Description tigr:9639.m00160
TID=OsAffx.30784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY-type DNA binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0254011/11WRKY DNA binding domain containing protein, expressed
LOC_Os12g024707/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02490Os.43567.1.S1_x_at4/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.29987.1.S1_at3/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.53217.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.38172.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02500OsAffx.6969.1.S1_at11/1111+776056..776570hypothetical protein
LOC_Os11g02510OsAffx.30782.1.S1_s_at11/1111+777413..777763hypothetical protein
LOC_Os11g02520Os.14882.1.S1_at8/1111+781359..782512WRKY DNA binding domain containing protein, expressed
LOC_Os11g02530OsAffx.30783.1.S1_at11/1111+786624..787865WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_s_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02550Os.52895.1.S1_x_at6/1111+800633..804507expressed protein
LOC_Os11g02550Os.9085.1.S1_at5/1111+800633..804507expressed protein
LOC_Os11g02570Os.48066.1.S1_at1/1111+811089..812334hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02580Os.53907.1.S1_at10/1111+812847..814796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02590OsAffx.22759.1.S1_at6/1111+815731..818034retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30784.1.S1_at--858--7091Chr11:793915..793939 (25 bp)
GTCAGAAGCAAATTGAAGGTGCCTT
LOC_Os11g02540
OsAffx.30784.1.S1_at--1011--3151Chr11:793905..793929 (25 bp)
AATTGAAGGTGCCTTGTACCCCAGG
LOC_Os11g02540
OsAffx.30784.1.S1_at--1068--2891Chr11:793905..793924 (20 bp)
AAGGTGCCTTGTACCCCAGGAGCTA
LOC_Os11g02540
OsAffx.30784.1.S1_at--420--2012Chr12:836069..836093 (25 bp)
ACTACCGGTGCACCAACAGCACAAA
LOC_Os12g02470
OsAffx.30784.1.S1_at--1145--1052Chr12:835990..836014 (25 bp)
AGGGTACACGGTGGCCTACATCTCA
LOC_Os12g02470
OsAffx.30784.1.S1_at--671--7032Chr12:835987..836011 (25 bp)
GTACACGGTGGCCTACATCTCAGAG
LOC_Os12g02470
OsAffx.30784.1.S1_at--51--1932Chr12:835983..836007 (25 bp)
ACGGTGGCCTACATCTCAGAGCATA
LOC_Os12g02470
OsAffx.30784.1.S1_at--570--8432Chr12:835978..836002 (25 bp)
GGCCTACATCTCAGAGCATACTTGC
LOC_Os12g02470
OsAffx.30784.1.S1_at--1148--1352Chr12:835966..835990 (25 bp)
AGAGCATACTTGCAAGTCCATCGAA
LOC_Os12g02470
OsAffx.30784.1.S1_at--520--332Chr12:835961..835985 (25 bp)
ATACTTGCAAGTCCATCGAACCATC
LOC_Os12g02470
OsAffx.30784.1.S1_at--348--10751Chr11:792590..792614 (25 bp)
TTGCAAGTCCATCGAACCATCCCTG
LOC_Os11g02540
Target Sequence 
GTCAGAAGCAAATTGAAGGTGCCTTGTACCCCAGGAGCTACTACCGGTGCACCAACAGCACAAACCAGGGCTGCCTCGCC
AAGAAGACGGTGCAGCGCAATGGCGGCGGCGGAGCAGCAGGGTACACGGTGGCCTACATCTCAGAGCATACTTGCAAGTC
CATCGAACCATCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis