Browse Element(s) Details


OsAffx.6969.1.S1_at

Description tigr:9639.m00156
TID=OsAffx.6969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0250011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02480Os.33990.1.S1_at11/1111+758588..762335WRKY DNA binding domain containing protein, expressed
LOC_Os11g02480OsAffx.16011.1.S1_at2/1111+758588..762335WRKY DNA binding domain containing protein, expressed
LOC_Os11g02490Os.43567.1.S1_x_at4/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.29987.1.S1_at3/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.53217.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.38172.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02500OsAffx.6969.1.S1_at11/1111+776056..776570hypothetical protein
LOC_Os11g02510OsAffx.30782.1.S1_s_at11/1111+777413..777763hypothetical protein
LOC_Os11g02520Os.14882.1.S1_at8/1111+781359..782512WRKY DNA binding domain containing protein, expressed
LOC_Os11g02530OsAffx.30783.1.S1_at11/1111+786624..787865WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_s_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02550Os.52895.1.S1_x_at6/1111+800633..804507expressed protein
LOC_Os11g02550Os.9085.1.S1_at5/1111+800633..804507expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6969.1.S1_at--1128--3751Chr11:776086..776110 (25 bp)
CTCTTCATGCTCAATCAGGCGCAAA
LOC_Os11g02500
OsAffx.6969.1.S1_at--861--9611Chr11:776090..776114 (25 bp)
TCATGCTCAATCAGGCGCAAATTCT
LOC_Os11g02500
OsAffx.6969.1.S1_at--803--8371Chr11:776103..776127 (25 bp)
GGCGCAAATTCTGAACTGCGTTCCA
LOC_Os11g02500
OsAffx.6969.1.S1_at--957--31Chr11:776110..776134 (25 bp)
ATTCTGAACTGCGTTCCAGACTTCG
LOC_Os11g02500
OsAffx.6969.1.S1_at--473--5471Chr11:776115..776139 (25 bp)
GAACTGCGTTCCAGACTTCGATGAA
LOC_Os11g02500
OsAffx.6969.1.S1_at--415--1991Chr11:776117..776141 (25 bp)
ACTGCGTTCCAGACTTCGATGAAGA
LOC_Os11g02500
OsAffx.6969.1.S1_at--957--4051Chr11:776133..776157 (25 bp)
CGATGAAGAACATTCAGTTATGCAA
LOC_Os11g02500
OsAffx.6969.1.S1_at--908--2771Chr11:776181..776205 (25 bp)
AAGAGATGGTCTCCTGAAGGCTGAA
LOC_Os11g02500
OsAffx.6969.1.S1_at--246--811Chr11:776186..776207 (22 bp)
ATGGTCTCCTGAAGGCTGAAGTCGC
LOC_Os11g02500
OsAffx.6969.1.S1_at--90--7171Chr11:776189..776536 (25 bp)
GTCTCCTGAAGGCTGAAGTCGCAGT
LOC_Os11g02500
OsAffx.6969.1.S1_at--942--4271Chr11:776193..776540 (25 bp)
CCTGAAGGCTGAAGTCGCAGTCCGT
LOC_Os11g02500
Target Sequence 
CTCTTCATGCTCAATCAGGCGCAAATTCTGAACTGCGTTCCAGACTTCGATGAAGAACATTCAGTTATGCAAAAAAGAGA
TTTAATTTTGAAAATAAGAGATGGTCTCCTGAAGGCTGAAGTCGCAGTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis