Browse Element(s) Details


OsAffx.30784.1.S1_s_at

Description tigr:9639.m00160
TID=OsAffx.30784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY-type DNA binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0254011/11WRKY DNA binding domain containing protein, expressed
LOC_Os12g024703/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02490Os.43567.1.S1_x_at4/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.29987.1.S1_at3/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.53217.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.38172.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02500OsAffx.6969.1.S1_at11/1111+776056..776570hypothetical protein
LOC_Os11g02510OsAffx.30782.1.S1_s_at11/1111+777413..777763hypothetical protein
LOC_Os11g02520Os.14882.1.S1_at8/1111+781359..782512WRKY DNA binding domain containing protein, expressed
LOC_Os11g02530OsAffx.30783.1.S1_at11/1111+786624..787865WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_s_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02550Os.52895.1.S1_x_at6/1111+800633..804507expressed protein
LOC_Os11g02550Os.9085.1.S1_at5/1111+800633..804507expressed protein
LOC_Os11g02570Os.48066.1.S1_at1/1111+811089..812334hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02580Os.53907.1.S1_at10/1111+812847..814796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02590OsAffx.22759.1.S1_at6/1111+815731..818034retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30784.1.S1_s_at--971--4011Chr11:792480..792504 (25 bp)
CGTCGTCGTCGAATATGGTCATGAC
LOC_Os11g02540
OsAffx.30784.1.S1_s_at--324--9571Chr11:792462..792486 (25 bp)
TCATGACGAGTAGCGAGACTGGTAA
LOC_Os11g02540
OsAffx.30784.1.S1_s_at--511--9732Chr12:835774..835798 (25 bp)
TAATTGGAGCGGTCAGCACGGCGCC
LOC_Os12g02470
OsAffx.30784.1.S1_s_at--1124--4551Chr11:792420..792444 (25 bp)
GCGCCTACGCATGCCGACAGATGAT
LOC_Os11g02540
OsAffx.30784.1.S1_s_at--13--612Chr12:835741..835761 (21 bp)
ATGCCGACAGATGATCGCCGCCGAT
LOC_Os12g02470
OsAffx.30784.1.S1_s_at--708--1332Chr12:835714..835738 (25 bp)
AGAGTACTGCTGCTGGGACACTCCG
LOC_Os12g02470
OsAffx.30784.1.S1_s_at--10--1752Chr11:792343..792367 (25 bp)
ACCTCTGGCTCTAATGGTGGTAACA
LOC_Os11g02540
OsAffx.30784.1.S1_s_at--360--7051Chr11:792324..792348 (25 bp)
GTAACAGTACTTGTGCTGAGGATAT
LOC_Os11g02540
OsAffx.30784.1.S1_s_at--102--3131Chr11:792297..792321 (25 bp)
AATTATTGAGCAGGCCGATCAGGTC
LOC_Os11g02540
OsAffx.30784.1.S1_s_at--559--5771Chr11:792238..792262 (25 bp)
GACGATTTGCTCCTTGTTACTGACG
LOC_Os11g02540
OsAffx.30784.1.S1_s_at--1027--6751Chr11:792223..792247 (25 bp)
GTTACTGACGGCCTTATCGTTATAT
LOC_Os11g02540
Target Sequence 
CGTCGTCGTCGAATATGGTCATGACGAGTAGCGAGACTGGTAATTGGAGCGGTCAGCACGGCGCCTACGCATGCCGACAG
ATGATCGCCGCCGATGAAGAGTACTGCTGCTGGGACACTCCGGCGACGACGACGACCACCTCTGGCTCTAATGGTGGTAA
CAGTACTTGTGCTGAGGATATAGAATTATTGAGCAGGCCGATCAGGTCGCCGATGCACATCGCGGCGGAAGGGAATTGGA
TGGACGATTTGCTCCTTGTTACTGACGGCCTTATCGTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30784.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis