Browse Element(s) Details


Os.7502.2.S1_at

Description gb:AK103903.1
DB_XREF= gi:32989112
TID=Os.7502.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684B02.17 (P0684B02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150L19, full insert sequence.
FL= gb:AK103903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5093011/11expressed protein
LOC_Os12g0247010/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50870NANA1+29550035..29550346hypothetical protein
LOC_Os01g50880OsAffx.11551.1.S1_at11/111+29553402..29553811hypothetical protein
LOC_Os01g50890NANA1+29557804..29558064hypothetical protein
LOC_Os01g50900Os.47750.1.A1_at11/111+29558747..29559638Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os01g50910Os.10933.1.S1_at11/111+29559895..29561103Late embryogenesis abundant protein, expressed
LOC_Os01g50930Os.7502.2.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50930Os.7502.1.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50940Os.46956.1.S1_at10/111+29598028..29600087Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7502.2.S1_at--250--2892Chr12:833825..833849 (25 bp)
AAGGGAGACTGGAACTGTGCCCCAC
LOC_Os12g02470
Os.7502.2.S1_at--112--2072Chr12:833799..833823 (25 bp)
ACTTGCTATTAGCTTGTCAGCCTTC
LOC_Os12g02470
Os.7502.2.S1_at--203--7112Chr12:833784..833808 (25 bp)
GTCAGCCTTCGTTTATTTTATGTCA
LOC_Os12g02470
Os.7502.2.S1_at--163--7092Chr12:833763..833787 (25 bp)
GTCAACCAAGTATCATATTCAGCAT
LOC_Os12g02470
Os.7502.2.S1_at--395--692Chr12:833735..833759 (25 bp)
ATGACCATGCCCAACAGTTAAGCAG
LOC_Os12g02470
Os.7502.2.S1_at--622--912Chr12:833712..833736 (25 bp)
AGGCTGCCAGGCAGTTGTATGCCAG
LOC_Os12g02470
Os.7502.2.S1_at--501--10811Chr01:29571450..29571474 (25 bp)
TTGTATGCCAGCCATGTCTTCATTG
LOC_Os01g50930
Os.7502.2.S1_at--360--7152Chr12:833683..833707 (25 bp)
GTCTTCATTGTTTGCATCACTATTG
LOC_Os12g02470
Os.7502.2.S1_at--383--6652Chr12:833615..833639 (25 bp)
GTTGTTGCCATGCTTTACTTCACAT
LOC_Os12g02470
Os.7502.2.S1_at--1051--3312Chr12:833595..833619 (25 bp)
CACATTCTTTTCTGATTTCCATGTA
LOC_Os12g02470
Os.7502.2.S1_at--230--6512Chr12:833563..833587 (25 bp)
GATATATGCGTCCTTGCAGACCAAA
LOC_Os12g02470
Target Sequence 
AAGGGAGACTGGAACTGTGCCCCACCACTTGCTATTAGCTTGTCAGCCTTCGTTTATTTTATGTCAACCAAGTATCATAT
TCAGCATGGCATGACCATGCCCAACAGTTAAGCAGGCTGCCAGGCAGTTGTATGCCAGCCATGTCTTCATTGTTTGCATC
ACTATTGAGCATGTCACCACATAAAAACATTCGAAAAGGTGACATTGGGTGTTGTTGCCATGCTTTACTTCACATTCTTT
TCTGATTTCCATGTATATAATTGATATATGCGTCCTTGCAGACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7502.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis