Browse Element(s) Details


Os.10933.1.S1_at

Description gb:D26536.1
DB_XREF= gi:454878
TID=Os.10933.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10933 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for WSI18 protein induced by water stress, complete cds.
PROD=WSI18 protein induced by water stress
FL= gb:AK073837.1 gb:AK064074.1 gb:D26536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5091011/11Late embryogenesis abundant protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50870NANA1+29550035..29550346hypothetical protein
LOC_Os01g50880OsAffx.11551.1.S1_at11/111+29553402..29553811hypothetical protein
LOC_Os01g50890NANA1+29557804..29558064hypothetical protein
LOC_Os01g50900Os.47750.1.A1_at11/111+29558747..29559638Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os01g50910Os.10933.1.S1_at11/111+29559895..29561103Late embryogenesis abundant protein, expressed
LOC_Os01g50930Os.7502.2.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50930Os.7502.1.S1_at11/111+29566915..29573689expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10933.1.S1_at--55--591Chr01:29560524..29560548 (25 bp)
ATGCCAAGGACAGGGCGGCTGACAC
LOC_Os01g50910
Os.10933.1.S1_at--816--5911Chr01:29560451..29560475 (25 bp)
GAGCTACATTGGACAGACCGCCGAG
LOC_Os01g50910
Os.10933.1.S1_at--295--5311Chr01:29560203..29560227 (25 bp)
GAAGGACGCGGTGATGTACACGCTC
LOC_Os01g50910
Os.10933.1.S1_at--504--2171Chr01:29560186..29560210 (25 bp)
ACACGCTCGGGATGTCAGGCGATAA
LOC_Os01g50910
Os.10933.1.S1_at--906--2651Chr01:29560121..29560145 (25 bp)
AAGCCTGGAACTGGGAGTGACTACC
LOC_Os01g50910
Os.10933.1.S1_at--723--2711Chr01:29560080..29560104 (25 bp)
AAGCATGTGTCGTCTTTGGCACTGA
LOC_Os01g50910
Os.10933.1.S1_at--1065--7431Chr01:29560048..29560072 (25 bp)
GTGTACGTGTTGTATCCTCTTTTTT
LOC_Os01g50910
Os.10933.1.S1_at--717--10351Chr01:29560027..29560051 (25 bp)
TTTTAAGTTTCAGCTCGACTTCGAC
LOC_Os01g50910
Os.10933.1.S1_at--846--9411Chr01:29559998..29560022 (25 bp)
TCGGTGTCACACTTTGGTTTTTCAG
LOC_Os01g50910
Os.10933.1.S1_at--1103--3251Chr01:29559966..29559990 (25 bp)
CAACTGTTCATGTTTCTGGTTCCAT
LOC_Os01g50910
Os.10933.1.S1_at--535--8431Chr01:29559937..29559961 (25 bp)
GGCCAGTGTGGAGGTCAATGTTTAA
LOC_Os01g50910
Target Sequence 
ATGCCAAGGACAGGGCGGCTGACACGGCGCAGTCCGCCGCCGACCGCGCCCGCGACGGCGCCGGGCAGACCGGGAGCTAC
ATTGGACAGACCGCCGAGGCCGCCAAGCAGAAAGCGGCCGGCGCCGCGCAGTACGCCAAGGAGACCGCGATCGCCGGCAA
GGACAAGACCGGCGCCGTGCTCCAGCAGGCAGGGGAGCAGGTGAAGAGCGTGGCGGTGGGGGCGAAGGACGCGGTGATGT
ACACGCTCGGGATGTCAGGCGATAACAAGAACAACGCCGCTGCCGGCAAGGACACCAGCACCTACAAGCCTGGAACTGGG
AGTGACTACCAGTAATACGGTATAAGAAGCATGTGTCGTCTTTGGCACTGATGCCAAAGTGTACGTGTTGTATCCTCTTT
TTTAAGTTTCAGCTCGACTTCGACGTGTTCGGTGTCACACTTTGGTTTTTCAGNTGTGCTCAACTGTTCATGTTTCTGGT
TCCATGGAGGGCCAGTGTGGAGGTCAATGTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis