Browse Element(s) Details


Os.46956.1.S1_at

Description gb:AK064946.1
DB_XREF= gi:32974964
TID=Os.46956.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684B02.20 (P0684B02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P16, full insert sequence.
FL= gb:AK064946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5094010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50930Os.7502.2.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50930Os.7502.1.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50940Os.46956.1.S1_at10/111+29598028..29600087Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g50950NANA1+29604334..29604654hypothetical protein
LOC_Os01g50960Os.32485.1.S1_at10/111+29606973..29609745Transcriptional Coactivator p15 family protein, expressed
LOC_Os01g50970Os.34111.1.S1_at11/111+29612261..29615542expressed protein
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46956.1.S1_at--402--9311Chr01:29599717..29599741 (25 bp)
TCCCCGTGACAGTGCAGTGCAGTAA
LOC_Os01g50940
Os.46956.1.S1_at--708--3011Chr01:29599812..29599836 (25 bp)
AATCCTAGGTAGGTGCAACTCCTTG
LOC_Os01g50940
Os.46956.1.S1_at--1077--10071Chr01:29599821..29599845 (25 bp)
TAGGTGCAACTCCTTGTGACTTCAA
LOC_Os01g50940
Os.46956.1.S1_at--681--5151Chr01:29599826..29599850 (25 bp)
GCAACTCCTTGTGACTTCAAGCAAT
LOC_Os01g50940
Os.46956.1.S1_at--350--6791Chr01:29599899..29599923 (25 bp)
GTTAGATTTAGATCATTGTCTTAAA
LOC_Os01g50940
Os.46956.1.S1_at--349--6791Chr01:29599929..29599953 (25 bp)
GTTAGATTAAGATGCATGTACACAA
LOC_Os01g50940
Os.46956.1.S1_at--872--8731Chr01:29599945..29599969 (25 bp)
TGTACACAAATTTAGCCTGAAGCAT
LOC_Os01g50940
Os.46956.1.S1_at--1122--3671Chr01:29599989..29600013 (25 bp)
CTTTGATATGGCAATGACATGTCCT
LOC_Os01g50940
Os.46956.1.S1_at--100--6631Chr01:29600015..29600039 (25 bp)
GTTGTTGGATAAGCTTTTGTTTTCG
LOC_Os01g50940
Os.46956.1.S1_at--909--3651Chr01:29600028..29600050 (23 bp)
CTTTTGTTTTCGCTCAAGGCGTGGG
LOC_Os01g50940
Os.46956.1.S1_at--898--2331NONE
AAAGAGAACTGCTTAGTCACTAAAA
NONE
Target Sequence 
TCCCCGTGACAGTGCAGTGCAGTAAGTTAGTACTGTACTACCAGTACAGCAGTACTCNNNGTGCGTACGGTATAGCTGCC
AACTGTTATCAGTCTTTGAATCCTAGGTAGGTGCAACTCCTTGTGACTTCAAGCAATTAATGGAAGCAAAGATGATATTT
ATATATTTNTTTTCCTGATTTATATGTTAGATTTAGATCATTGTCTTAAAAAAATGTTAGATTAAGATGCATGTACACAA
ATTTAGCCTGAAGCATCGTATANGGGTTTTCCATACTTTGATATGGCAATGACATGTCCTNGTTGTTGGATAAGCTTTTG
TTTTCGCTCAAGGCGTGGGGAGGGAAAAAAAAAAGAGAACTGCTTAGTCACTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis