Browse Element(s) Details


OsAffx.11850.2.S1_x_at

Description tigr:9629.m07433
TID=OsAffx.11850.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cullin-like 1 protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5098011/11Cullin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50940Os.46956.1.S1_at10/111+29598028..29600087Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g50950NANA1+29604334..29604654hypothetical protein
LOC_Os01g50960Os.32485.1.S1_at10/111+29606973..29609745Transcriptional Coactivator p15 family protein, expressed
LOC_Os01g50970Os.34111.1.S1_at11/111+29612261..29615542expressed protein
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007049biological_processcell cycle
GO:0009639biological_processresponse to red or far red light
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009911biological_processpositive regulation of flower development
GO:0009960biological_processendosperm development
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11850.2.S1_x_at--115--7691Chr01:29621258..29621282 (25 bp)
GGGTAGAACGCTTACCTGGATCTAT
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--739--9951Chr01:29621270..29621294 (25 bp)
TACCTGGATCTATTCCCTTGGAAAT
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--302--6031Chr01:29621331..29621355 (25 bp)
GAGATGATTGTCTCACCAATGCAGG
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--679--3011Chr01:29621441..29621461 (21 bp)
AATGCAGGCTGCATTGCTGCTGCTA
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--872--2231Chr01:29621597..29621621 (25 bp)
ACAATTGCTCCAGACGACATATTTG
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--1045--2891Chr01:29621744..29621767 (24 bp)
AAGGTACCGCTTCATCATGTTGACA
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--611--8831Chr01:29621772..29621796 (25 bp)
TGATTTCCGTGCCAGTGAGACCATG
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--49--5351Chr01:29621901..29621925 (25 bp)
GAAGTTGTGTGATCCTTATTTCAAG
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--1121--7791Chr01:29622193..29622217 (25 bp)
GGTCGATGACGACCTCATACAAATG
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--969--6151Chr01:29622217..29622241 (25 bp)
GAGGATCGATCATCTTGTAGCCGAA
LOC_Os01g50980
OsAffx.11850.2.S1_x_at--280--6971Chr01:29622233..29622257 (25 bp)
GTAGCCGAAAATTATCTTGCTCGCA
LOC_Os01g50980
Target Sequence 
GGGTAGAACGCTTACCTGGATCTATTCCCTTGGAAATTGCAATATTGTTGGAAACTTTGAAGGCAAATCAGTTGAGATGA
TTGTCTCACCAATGCAGGCTGCATTGCTGCTGCTATTCAATGAAGATGATCGATTAAGTTATAATGACATTGTGGCTAAG
TTGGAAATCATGGACAATGATGCAAAAGTAATGCTGTATTCTTTATCATGTGGAAAGTACAGCATCCTAAAAAAGGAGCC
GAGCAACAAAACAATTGCTCCAGACGACATATTTGAGTTCAACAATAACTTCAGTGTTAAAACGGGAAAGATAAAGGTAC
CGCTTCATCATGTTGACAGGGGTGATTTCCGTGCCAGTGAGACCATGGAAGATGTCAGGAGGTACCGGAAGCAAAATGTC
GATTGCGCAATTGTGCGTATAATGAAGGATAGGAAGACATTGGATCATGAGAAACTCGTGGAGGAATGCAAGAAGTTGTG
TGATCCTTATTTCAAGGTCGATGACGACCTCATACAAATGAGGATCGATCATCTTGTAGCCGAAAATTATCTTGCTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11850.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis