Browse Element(s) Details


Os.32485.1.S1_at

Description gb:AK059936.1
DB_XREF= gi:32969954
TID=Os.32485.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D10, full insert sequence.
FL= gb:AK104192.1 gb:AK070545.1 gb:AK059936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5096010/11Transcriptional Coactivator p15 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50940Os.46956.1.S1_at10/111+29598028..29600087Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g50950NANA1+29604334..29604654hypothetical protein
LOC_Os01g50960Os.32485.1.S1_at10/111+29606973..29609745Transcriptional Coactivator p15 family protein, expressed
LOC_Os01g50970Os.34111.1.S1_at11/111+29612261..29615542expressed protein
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006952biological_processdefense response
GO:0003677molecular_functionDNA binding
GO:0003713molecular_functiontranscription coactivator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32485.1.S1_at--637--5891NONE
GAGCTGCCCGCCAAAGGGATAAGTT
NONE
Os.32485.1.S1_at--773--4951Chr01:29607503..29607527 (25 bp)
GCATTTCGTGATTCTGTGCCAGCAA
LOC_Os01g50960
Os.32485.1.S1_at--477--2711Chr01:29607437..29607461 (25 bp)
AAGCATGTTTCAGAAGCCCCTTTTG
LOC_Os01g50960
Os.32485.1.S1_at--843--4531Chr01:29607422..29607446 (25 bp)
GCCCCTTTTGCCTGTATCAAATCAA
LOC_Os01g50960
Os.32485.1.S1_at--913--3231Chr01:29607400..29607424 (25 bp)
CAAGAAGGCCTTTGTTCTGGCCCTT
LOC_Os01g50960
Os.32485.1.S1_at--609--9871Chr01:29607375..29607399 (25 bp)
TACTTAGGGCCAGTACAGGCTGTAA
LOC_Os01g50960
Os.32485.1.S1_at--1080--2171Chr01:29607194..29607218 (25 bp)
ACACTGACATGCATCTGGCTACTTT
LOC_Os01g50960
Os.32485.1.S1_at--311--811Chr01:29607156..29607180 (25 bp)
ATGGGTTCCAGCAACAAGCCTCTTT
LOC_Os01g50960
Os.32485.1.S1_at--224--671Chr01:29607089..29607113 (25 bp)
ATGAAGAATTAGTTCTCCGCCGCTA
LOC_Os01g50960
Os.32485.1.S1_at--336--3811Chr01:29607075..29607099 (25 bp)
CTCCGCCGCTAGATGTTAGTGTTTT
LOC_Os01g50960
Os.32485.1.S1_at--216--10071Chr01:29607059..29607083 (25 bp)
TAGTGTTTTTCGTTCATGCCCTTAC
LOC_Os01g50960
Target Sequence 
GAGCTGCCCGCCAAAGGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGC
CATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCATGTTTCAGAAGCCCCTTTTGCCTGTATCAAATCAAGAAGGCCTT
TGTTCTGGCCCTTTACTTAGGGCCAGTACAGGCTGTAANTCCGCTATGGAGGGTCTGGAGGTACTAGGGTTCCTATAAAC
TTTTGTAAAACTTATCCCTTAGTCAAGCTGCATGATGCTGTGTAGGGTAGACGGTTGGAGACTTGGAGAAGTAATTTCTT
CATATGCTCGTCTTAATATTGGAGTTAGTGATGTACACTGACATGCATCTGGCTACTTTAGAAAAATCAGACATGGGTTC
CAGCAACAAGCCTCTTTTGTTTGGATCATGAGGCACTGTCATCGGACTAACTCATCTTTATGAAGAATTAGTTCTCCGCC
GCTAGATGTTAGTGTTTTTCGTTCATGCCCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis