Browse Element(s) Details


OsAffx.2296.1.S1_at

Description tigr:9629.m04939
TID=OsAffx.2296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5100011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50950NANA1+29604334..29604654hypothetical protein
LOC_Os01g50960Os.32485.1.S1_at10/111+29606973..29609745Transcriptional Coactivator p15 family protein, expressed
LOC_Os01g50970Os.34111.1.S1_at11/111+29612261..29615542expressed protein
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein
LOC_Os01g51050OsAffx.21558.1.S1_at11/111+29650067..29651187Jacalin-like lectin domain containing protein, expressed
LOC_Os01g51060Os.18272.1.S1_x_at11/111+29653536..29661639IAA-amino acid hydrolase homolog 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2296.1.S1_at--1114--10211Chr01:29628841..29628861 (21 bp)
TTAGGGCAGGTACCACAGTAATTTT
LOC_Os01g51000
OsAffx.2296.1.S1_at--595--1711Chr01:29628848..29628872 (25 bp)
ACCACAGTAATTTTGATGACTGCAA
LOC_Os01g51000
OsAffx.2296.1.S1_at--189--4851Chr01:29628902..29628926 (25 bp)
GCTACTTTTATGAGTAGTAATCCAA
LOC_Os01g51000
OsAffx.2296.1.S1_at--947--10411Chr01:29628909..29628933 (25 bp)
TTATGAGTAGTAATCCAAGAGAGAA
LOC_Os01g51000
OsAffx.2296.1.S1_at--331--2291Chr01:29629208..29629232 (25 bp)
AAATGATCATGATTCAGTGGCCTAC
LOC_Os01g51000
OsAffx.2296.1.S1_at--681--711Chr01:29629210..29629234 (25 bp)
ATGATCATGATTCAGTGGCCTACTC
LOC_Os01g51000
OsAffx.2296.1.S1_at--1044--6431Chr01:29629212..29629236 (25 bp)
GATCATGATTCAGTGGCCTACTCAA
LOC_Os01g51000
OsAffx.2296.1.S1_at--299--9631Chr01:29629214..29629238 (25 bp)
TCATGATTCAGTGGCCTACTCAAGA
LOC_Os01g51000
OsAffx.2296.1.S1_at--383--6571Chr01:29629218..29629242 (25 bp)
GATTCAGTGGCCTACTCAAGATCTA
LOC_Os01g51000
OsAffx.2296.1.S1_at--83--10531Chr01:29629220..29629244 (25 bp)
TTCAGTGGCCTACTCAAGATCTAAT
LOC_Os01g51000
OsAffx.2296.1.S1_at--461--1091Chr01:29629223..29629247 (25 bp)
AGTGGCCTACTCAAGATCTAATCAA
LOC_Os01g51000
Target Sequence 
TTAGGGCAGGTACCACAGTAATTTTGATGACTGCAAAATATCCTAACAAAGAACATGTGGCATATGCTACTTTTATGAGT
AGTAATCCAAGAGAGAAAGTGGGTGGTGTTGAGATAGATTCAAAAGATCAATGGTTAAATGATCATGATTCAGTGGCCTA
CTCAAGATCTAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis