Browse Element(s) Details


Os.18272.1.S1_x_at

Description gb:AK105646.1
DB_XREF= gi:32990855
TID=Os.18272.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative IAA-Ala hydrolase (P0510F09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F07, full insert sequence.
FL= gb:AK105646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5106011/11IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein
LOC_Os01g51050OsAffx.21558.1.S1_at11/111+29650067..29651187Jacalin-like lectin domain containing protein, expressed
LOC_Os01g51060Os.18272.1.S1_x_at11/111+29653536..29661639IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g51070OsAffx.11556.1.S1_at11/111+29665161..29665680hypothetical protein
LOC_Os01g51080NANA1+29672292..29675071retrotransposon protein, putative, unclassified
LOC_Os01g51090NANA1+29675556..29678446retrotransposon protein, putative, unclassified
LOC_Os01g51100NANA1+29679530..29682362retrotransposon protein, putative, unclassified
LOC_Os01g51110OsAffx.21556.1.S1_at3/111+29684385..29684902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18272.1.S1_x_at--510--451Chr01:29654792..29654816 (25 bp)
ATGAGGTACCTGGACGAACGCCGGC
LOC_Os01g51060
Os.18272.1.S1_x_at--472--6191Chr01:29654744..29654768 (25 bp)
GAGGAACTCTAGTTTCGTCCAGTCG
LOC_Os01g51060
Os.18272.1.S1_x_at--709--471Chr01:29654715..29654739 (25 bp)
ATCTGCCTTGCATCCGACTTGGCGA
LOC_Os01g51060
Os.18272.1.S1_x_at--456--551Chr01:29654605..29654629 (25 bp)
ATCCGCGGCGGATTTTGTCATCGAC
LOC_Os01g51060
Os.18272.1.S1_x_at--383--8731Chr01:29654590..29654614 (25 bp)
TGTCATCGACGATTACACTGTAAGG
LOC_Os01g51060
Os.18272.1.S1_x_at--565--3331Chr01:29654575..29654599 (25 bp)
CACTGTAAGGAATTCTGGGCTCGAC
LOC_Os01g51060
Os.18272.1.S1_x_at--351--4791Chr01:29654557..29654581 (25 bp)
GCTCGACCTTGGCATTCTGACGAAA
LOC_Os01g51060
Os.18272.1.S1_x_at--1113--6571Chr01:29654507..29654531 (25 bp)
GATTGCATGTTCGATGCGGCGCCAG
LOC_Os01g51060
Os.18272.1.S1_x_at--21--3931Chr01:29654482..29654506 (25 bp)
CGGCCCAGCGCGGTGCAAATTGTAA
LOC_Os01g51060
Os.18272.1.S1_x_at--896--2351Chr01:29654459..29654483 (25 bp)
AAAGCTGATAAGCTGCACGCACGCA
LOC_Os01g51060
Os.18272.1.S1_x_at--1080--2231Chr01:29654384..29654408 (25 bp)
AAATTGACGGTCTTGCACCCAGTGA
LOC_Os01g51060
Target Sequence 
ATGAGGTACCTGGACGAACGCCGGCGCGAGGGCGGCTCGCACCCTCACGAGGAACTCTAGTTTCGTCCAGTCGCTGCATC
TGCCTTGCATCCGACTTGGCGACGTCGANTCNCCACGGCGCCGGCGGCGTCTNTGTTCAGCCCACGCGCACGGCGGTTNG
CGGAGCTCAAGATGGTCGAGGTTNGNTATCCGCGGCGGATTTTGTCATCGACGATTACACTGTAAGGAATTCTGGGCTCG
ACCTTGGCATTCTGACGAAAACCTAGGTAGGAATGTAGAATGGGCGATTGCATGTTCGATGCGGCGCCAGCGGCCCAGCG
CGGTGCAAATTGTAAAGCTGATAAGCTGCACGCACGCAGAAATTATCTGAGAAGAAGAGTTCAGGCGATCAGTGAACCAA
ATGTTTACAAATTGACGGTCTTGCACCCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18272.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis