Browse Element(s) Details


OsAffx.11556.1.S1_at

Description gb:NM_191669.1
DB_XREF= gi:34910421
GEN=P0510F09.5
TID=OsAffx.11556.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0510F09.5 (P0510F09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5107011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein
LOC_Os01g51050OsAffx.21558.1.S1_at11/111+29650067..29651187Jacalin-like lectin domain containing protein, expressed
LOC_Os01g51060Os.18272.1.S1_x_at11/111+29653536..29661639IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g51070OsAffx.11556.1.S1_at11/111+29665161..29665680hypothetical protein
LOC_Os01g51080NANA1+29672292..29675071retrotransposon protein, putative, unclassified
LOC_Os01g51090NANA1+29675556..29678446retrotransposon protein, putative, unclassified
LOC_Os01g51100NANA1+29679530..29682362retrotransposon protein, putative, unclassified
LOC_Os01g51110OsAffx.21556.1.S1_at3/111+29684385..29684902hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11556.1.S1_at--569--1131Chr01:29665610..29665634 (25 bp)
AGCCGCAACGCCTGAAACGCGCGCA
LOC_Os01g51070
OsAffx.11556.1.S1_at--776--1831Chr01:29665574..29665598 (25 bp)
ACGCGGGGCAGTTGATGATGATCCT
LOC_Os01g51070
OsAffx.11556.1.S1_at--328--711Chr01:29665560..29665584 (25 bp)
ATGATGATCCTGCAGGCGCGGCATC
LOC_Os01g51070
OsAffx.11556.1.S1_at--689--6291Chr01:29665558..29665582 (25 bp)
GATGATCCTGCAGGCGCGGCATCAA
LOC_Os01g51070
OsAffx.11556.1.S1_at--662--9051Chr01:29665550..29665574 (25 bp)
TGCAGGCGCGGCATCAACTGGCAGT
LOC_Os01g51070
OsAffx.11556.1.S1_at--436--8271Chr01:29665541..29665565 (25 bp)
GGCATCAACTGGCAGTGCGCCCTGA
LOC_Os01g51070
OsAffx.11556.1.S1_at--512--9711Chr01:29665537..29665561 (25 bp)
TCAACTGGCAGTGCGCCCTGACGAA
LOC_Os01g51070
OsAffx.11556.1.S1_at--526--8491Chr01:29665532..29665556 (25 bp)
TGGCAGTGCGCCCTGACGAAAAATT
LOC_Os01g51070
OsAffx.11556.1.S1_at--338--1131Chr01:29665528..29665552 (25 bp)
AGTGCGCCCTGACGAAAAATTCTGT
LOC_Os01g51070
OsAffx.11556.1.S1_at--528--4531Chr01:29665525..29665549 (25 bp)
GCGCCCTGACGAAAAATTCTGTCCA
LOC_Os01g51070
OsAffx.11556.1.S1_at--367--4092Chr06:7731880..7731899 (20 bp)
CGAAAAATTCTGTCCAAATGTTAGT
NONE
Target Sequence 
AGCCGCAACGCCTGAAACGCGCGCAGCCGCAACGCGACGCGGGGCAGTTGATGATGATCCTGCAGGCGCGGCATCAACTG
GCAGTGCGCCCTGACGAAAAATTCTGTCCAAATGTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis