Browse Element(s) Details


OsAffx.21558.1.S1_at

Description tigr:9629.m04944
TID=OsAffx.21558.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Jacalin-like lectin domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5105011/11Jacalin-like lectin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein
LOC_Os01g51050OsAffx.21558.1.S1_at11/111+29650067..29651187Jacalin-like lectin domain containing protein, expressed
LOC_Os01g51060Os.18272.1.S1_x_at11/111+29653536..29661639IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g51070OsAffx.11556.1.S1_at11/111+29665161..29665680hypothetical protein
LOC_Os01g51080NANA1+29672292..29675071retrotransposon protein, putative, unclassified
LOC_Os01g51090NANA1+29675556..29678446retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21558.1.S1_at--1075--4631Chr01:29650669..29650693 (25 bp)
GCGTCCGGAGCATCGCCCTGACGTA
LOC_Os01g51050
OsAffx.21558.1.S1_at--681--8031Chr01:29650617..29650641 (25 bp)
GGAGTACGACAGGAACGGCCACCCT
LOC_Os01g51050
OsAffx.21558.1.S1_at--511--1431Chr01:29650557..29650580 (24 bp)
AGAACAAGCCGCACTGCCGAGGTGA
LOC_Os01g51050
OsAffx.21558.1.S1_at--434--1031Chr01:29650440..29650464 (25 bp)
AGGTGAAGCTGGACTACCCGTACGA
LOC_Os01g51050
OsAffx.21558.1.S1_at--858--8511Chr01:29650431..29650455 (25 bp)
TGGACTACCCGTACGAGTTCCTGAC
LOC_Os01g51050
OsAffx.21558.1.S1_at--734--6971Chr01:29650421..29650445 (25 bp)
GTACGAGTTCCTGACCGGCGTCGGC
LOC_Os01g51050
OsAffx.21558.1.S1_at--629--8551Chr01:29650359..29650383 (25 bp)
TGGTTCGGTCGCTGACGTTCCGGAC
LOC_Os01g51050
OsAffx.21558.1.S1_at--295--7791Chr01:29650353..29650377 (25 bp)
GGTCGCTGACGTTCCGGACGAGCAC
LOC_Os01g51050
OsAffx.21558.1.S1_at--315--1391Chr01:29650176..29650200 (25 bp)
AGACGCTCTGCGACGTGGTCCAGGA
LOC_Os01g51050
OsAffx.21558.1.S1_at--434--871Chr01:29650141..29650165 (25 bp)
ATGGCGTACCGGTCTTTCGTCTACG
LOC_Os01g51050
OsAffx.21558.1.S1_at--1034--4791Chr01:29650101..29650125 (25 bp)
GCTCGGGAGCGCATCAGCTGCAGCA
LOC_Os01g51050
Target Sequence 
GCGTCCGGAGCATCGCCCTGACGTACGGGCGGTTCCTCGAGTCGATGAGGGTGGAGTACGACAGGAACGGCCACCCTGTC
CACGGCGAGAAGCACGGCGGCGGCGGCGACGGCAGAACAAGCCGCACTGCCGAGGTGAAGCTGGACTACCCGTACGAGTT
CCTGACCGGCGTCGGCGGCCGGTGCGGCCCGGTGGCGCACGGCGGATCGACGGTGGTTCGGTCGCTGACGTTCCGGACGA
GCACGGGGGCGGTGCACGGGCCGTTCGGGGACGCGTCGGGGGACGGGGTGCCGTTCGAGTACCCGATGGAGGGCGGCGTG
GTGGTCGGGTTCAGCGGGAGGAGCGGGTGGTGGCACCTCGACGCCGTCGGCCTGCACGTCGCGGCGCTGCGCCCGGAGAC
GCTCTGCGACGTGGTCCAGGAGCGCGGCGCCATGGCGTACCGGTCTTTCGTCTACGGGAACGGCGGCAGCAGCTCGGGAG
CGCATCAGCTGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis