Browse Element(s) Details


Os.9113.3.S1_x_at

Description gb:NM_191652.1
DB_XREF= gi:34910387
GEN=P0692C11.15
TID=Os.9113.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0692C11.15 (P0692C11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0692C11.15 (P0692C11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5101011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50960Os.32485.1.S1_at10/111+29606973..29609745Transcriptional Coactivator p15 family protein, expressed
LOC_Os01g50970Os.34111.1.S1_at11/111+29612261..29615542expressed protein
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein
LOC_Os01g51050OsAffx.21558.1.S1_at11/111+29650067..29651187Jacalin-like lectin domain containing protein, expressed
LOC_Os01g51060Os.18272.1.S1_x_at11/111+29653536..29661639IAA-amino acid hydrolase homolog 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9113.3.S1_x_at--104--371Chr01:29638469..29638493 (25 bp)
ATAATGCTCCAAGTTCTGTGATGAA
LOC_Os01g51010
Os.9113.3.S1_x_at--827--5031Chr01:29638662..29638686 (25 bp)
GCAGATTCAATCACGCAGGACTCAG
LOC_Os01g51010
Os.9113.3.S1_x_at--308--2271Chr01:29638756..29638780 (25 bp)
AAATCACCTGCTGGGTCATTTTCTA
LOC_Os01g51010
Os.9113.3.S1_x_at--647--6011Chr01:29638797..29638821 (25 bp)
GAGAGACTCACCTGTGTACTCCAGG
LOC_Os01g51010
Os.9113.3.S1_x_at--923--9911Chr01:29638813..29638837 (25 bp)
TACTCCAGGGTTCCAGTACCACGAA
LOC_Os01g51010
Os.9113.3.S1_x_at--204--5491Chr01:29638835..29638859 (25 bp)
GAACTTCACCAAAACCTGTGCGTGT
LOC_Os01g51010
Os.9113.3.S1_x_at--308--4651Chr01:29638854..29638878 (25 bp)
GCGTGTGGAACCTCCCTTGGGCAAA
LOC_Os01g51010
Os.9113.3.S1_x_at--119--5551Chr01:29638939..29638963 (25 bp)
GAAAGCCCAGCAGAAACTCCGAAAG
LOC_Os01g51010
Os.9113.3.S1_x_at--637--2411Chr01:29638974..29638998 (25 bp)
AAAAACTGCTCCGTCGCATGTTCAC
LOC_Os01g51010
Os.9113.3.S1_x_at--843--4171Chr01:29638999..29639023 (25 bp)
CCCAAGCTTCCGACAGACTATGATT
LOC_Os01g51010
Os.9113.3.S1_x_at--1048--1391Chr01:29639013..29639037 (25 bp)
AGACTATGATTCGTTTGCTGCACAT
LOC_Os01g51010
Target Sequence 
ATAATGCTCCAAGTTCTGTGATGAATAAGAGTTCTGGAGGTGTAAATTCCAGTCAAGATCTGTACCATGAAAAGCCAGGT
GCTGGAGCCCGCAGGGGAACTACAACAAAAACTGCCAAAAGTTACTTTGATTCAGATGATAGCGAGGACGAATTGGCACA
ACGCAAGGAGGTCCAGACAAAGTGGTCTAGAGAGCAGATTCAATCACGCAGGACTCAGATGACATCAGATACAAAGAAAG
AAACCGGTGTCCGAGTTGGAGTGCAGCATGCTGATGAAACTGAGGCGAAATCACCTGCTGGGTCATTTTCTAGGTTTACT
GAACAAAGGAGAGACTCACCTGTGTACTCCAGGGTTCCAGTACCACGAACTTCACCAAAACCTGTGCGTGTGGAACCTCC
CTTGGGCAAAGGGAAGTCACAAGAAGCTGATCTGAATACAGTTTCTGTCACAGGAAAGGAGGAAAACACAGAAAGCCCAG
CAGAAACTCCGAAAGAAAGCACCTCAAAAACTGCTCCGTCGCATGTTCACCCCAAGCTTCCGACAGACTATGATTCGTTT
GCTGCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9113.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis