Browse Element(s) Details


Os.34111.1.S1_at

Description gb:AK072799.1
DB_XREF= gi:32982822
TID=Os.34111.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684B02.25 (P0684B02.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136E17, full insert sequence.
FL= gb:AK072799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5097011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50940Os.46956.1.S1_at10/111+29598028..29600087Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g50950NANA1+29604334..29604654hypothetical protein
LOC_Os01g50960Os.32485.1.S1_at10/111+29606973..29609745Transcriptional Coactivator p15 family protein, expressed
LOC_Os01g50970Os.34111.1.S1_at11/111+29612261..29615542expressed protein
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34111.1.S1_at--651--551Chr01:29613889..29613913 (25 bp)
ATCCGTGTTATTGCAGAGGCTCCCT
LOC_Os01g50970
Os.34111.1.S1_at--556--3071Chr01:29613964..29613988 (25 bp)
AATCAACAAGTCACACTCTTCCTTA
LOC_Os01g50970
Os.34111.1.S1_at--255--631Chr01:29613998..29614022 (25 bp)
ATGCTCGGTGCCACAGTTGAGTTGA
LOC_Os01g50970
Os.34111.1.S1_at--131--1251Chr01:29614017..29614041 (25 bp)
AGTTGAACTTTTGTGCATGCCCTGA
LOC_Os01g50970
Os.34111.1.S1_at--329--2611Chr01:29614070..29614094 (25 bp)
AACGCCGATCACTTAGCATCTAAAC
LOC_Os01g50970
Os.34111.1.S1_at--1044--7971Chr01:29615237..29615261 (25 bp)
GGATGCTGGACTTGTTGACGAACTT
LOC_Os01g50970
Os.34111.1.S1_at--696--10251Chr01:29615288..29615312 (25 bp)
TTTGTGCCAAGCTAACTGATCTGTT
LOC_Os01g50970
Os.34111.1.S1_at--596--1211Chr01:29615382..29615406 (25 bp)
AGTTAGTCCCATCACCTGTCATGAT
LOC_Os01g50970
Os.34111.1.S1_at--411--171Chr01:29615433..29615457 (25 bp)
ATTTAGACCGCTCCTGTACTTTTCT
LOC_Os01g50970
Os.34111.1.S1_at--615--9771Chr01:29615476..29615500 (25 bp)
TAATGTGCCATGATCCATACTTGTG
LOC_Os01g50970
Os.34111.1.S1_at--236--5211Chr01:29615515..29615539 (25 bp)
GAATTCTCTTGTCAAATGCCTAGGA
LOC_Os01g50970
Target Sequence 
ATCCGTGTTATTGCAGAGGCTCCCTTCCCTGCAAAAAATGACGATATTCTATGACCGTGAGATCAGTGATTTAGTAATCA
ACAAGTCACACTCTTCCTTACAAGCAGCCATGCTCGGTGCCACAGTTGAGTTGAACTTTTGTGCATGCCCTGAGTCTTCA
TGGACTCTACAAGAAGCCCTAAACGCCGATCACTTAGCATCTAAACCATGAGGATATGTCAAAAGCTGTCTACATTTGGA
GCTTGAAAGTGCAATTGGATAAGCATTTTGGACACTGGGAAGAGGATGCTGGACTTGTTGACGAACTTCAGAAAAGGAAC
AACACAATATGTTATTTGTGCCAAGCTAACTGATCTGTTGTTTCAATATCTAAAAAAACTGATCTGTTGTTTTAATGCCT
ACTAAGACCATATTATTGTTTTTTTTACAGTTAGTCCCATCACCTGTCATGATGACTTGACAGTTACTTTTTGAACAAAA
TTTAGACCGCTCCTGTACTTTTCTCATTTTCTAGTTGGGAGATAATGTGCCATGATCCATACTTGTGGTTTGGTTTGTCA
AGAATTCTCTTGTCAAATGCCTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis