Browse Element(s) Details


Os.40148.1.S1_at

Description gb:CF330254
DB_XREF= gi:33808738
DB_XREF=NACL--05-O09.g1
CLONE=NACL--05-O09
TID=Os.40148.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ribosomal protein L28-like (P0510F09.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5102011/11Ribosomal L28e protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein
LOC_Os01g51050OsAffx.21558.1.S1_at11/111+29650067..29651187Jacalin-like lectin domain containing protein, expressed
LOC_Os01g51060Os.18272.1.S1_x_at11/111+29653536..29661639IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g51070OsAffx.11556.1.S1_at11/111+29665161..29665680hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40148.1.S1_at--65--2751Chr01:29642483..29642507 (25 bp)
AAGAAAACCGTGACGGTCCAGCCTG
LOC_Os01g51020
Os.40148.1.S1_at--603--7251Chr01:29642498..29642522 (25 bp)
GTCCAGCCTGCCAGTGGTAAGGAAA
LOC_Os01g51020
Os.40148.1.S1_at--431--2931Chr01:29642516..29642540 (25 bp)
AAGGAAACGGCAGTGGTCCTCTCTA
LOC_Os01g51020
Os.40148.1.S1_at--796--7791Chr01:29642530..29642554 (25 bp)
GGTCCTCTCTACAACCAAGACAGAG
LOC_Os01g51020
Os.40148.1.S1_at--912--10451Chr01:29643365..29643389 (25 bp)
TTACCAAGCCAGCACTTGCAAGGCT
LOC_Os01g51020
Os.40148.1.S1_at--106--3211Chr01:29643383..29643407 (25 bp)
CAAGGCTGAGCGCAGTCTACCGCAG
LOC_Os01g51020
Os.40148.1.S1_at--48--4311Chr01:29643513..29643537 (25 bp)
CCATCCTCCTTGATTCCTTTTAATA
LOC_Os01g51020
Os.40148.1.S1_at--1085--8631Chr01:29643576..29643600 (25 bp)
TGGGCCTCAGAGTATGACGAATGCT
LOC_Os01g51020
Os.40148.1.S1_at--845--1011Chr01:29643631..29643655 (25 bp)
AGGTTTCATGTCTGTACCCGTGATA
LOC_Os01g51020
Os.40148.1.S1_at--548--10471Chr01:29643685..29643709 (25 bp)
TTAATAACCTCCCTAAAGTCATTGG
LOC_Os01g51020
Os.40148.1.S1_at--867--7131Chr01:29643702..29643726 (25 bp)
GTCATTGGTTTGTTGTGCCATATCA
LOC_Os01g51020
Target Sequence 
AAGAAAACCGTGACGGTCCAGCCTGCCAGTGGTAAGGAAACGGCAGTGGTCCTCTCTACAACCAAGACAGAGAAGCAGAA
CAAGCCTGCTAGCCTCTACCACAAGTCTGTCANGCGCAAGGAGTTCCGCAAAATGGCCAAGGCTGTCAAGAACCAGGTCA
GCGACAACTACTACCGGCCTGACCTTACCAAGCCAGCACTTGCAAGGCTGAGCGCAGTCTACCGCAGCCTCCAGGTTGCC
AAATCTGGTGTCAAAAAGAAGAACAGGCAGGCAAACTAAAAAAAGGCAAGATCCAATTAGCTTGTTTTGTGTATGGGTAT
TNGATTTGTGCTTCCATCCTCCTTGATTCCTTTTAATATGNTGCTCGGAGTATGCTTTTAGATTGTTTTGNAGATTATGG
GCCTCAGAGTATGACGAATGCTGNTCACAAGAGAGCTAAAAATTTTCGTAGTAGGTTTCATGTCTGTACCCGTGATATAT
TATTAAGCATNTTAATTAATAGGGTATTAATAACCTCCCTAAAGTCATTGGTTTGTTGTGCCATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis