Browse Element(s) Details


Os.19126.1.S1_at

Description gb:AK111501.1
DB_XREF= gi:37988164
TID=Os.19126.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.19126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033100L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000N04, full insert sequence.
FL= gb:AK111501.1 gb:AK102647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6394011/11protein kinase AKINbetagamma-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63890NANA3+36039442..36039871myb family transcription factor, putative
LOC_Os03g63900Os.21024.1.S1_at11/113+36042503..36044053oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g63910Os.27221.1.A1_at11/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63910Os.9010.4.S1_x_at5/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63920Os.9010.3.S1_x_at10/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63920Os.9010.1.S1_x_at6/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63930Os.15249.1.S1_at11/113+36058608..36060953Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os03g63940Os.19126.1.S1_at11/113+36063410..36070970protein kinase AKINbetagamma-2, putative, expressed
LOC_Os03g63950Os.11795.1.S1_a_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63950Os.11795.1.S1_s_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63970Os.48429.1.S1_at11/113+36089654..36091475Gibberellin 20 oxidase 1, putative, expressed
LOC_Os03g63980NANA3+36091846..36092469hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042149biological_processcellular response to glucose starvation
GO:0030295molecular_functionprotein kinase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19126.1.S1_at--1094--8791Chr03:36070404..36070428 (25 bp)
TGTTCTCACAACTGCCGGAGTTAAC
LOC_Os03g63940
Os.19126.1.S1_at--51--8691Chr03:36070445..36070469 (25 bp)
TGTGAATCTCCAACATCGATCTCTC
LOC_Os03g63940
Os.19126.1.S1_at--423--2491Chr03:36070456..36070480 (25 bp)
AACATCGATCTCTCTGGCTTTTGGA
LOC_Os03g63940
Os.19126.1.S1_at--331--8491Chr03:36070470..36070494 (25 bp)
TGGCTTTTGGATCAGACAGGTGTCT
LOC_Os03g63940
Os.19126.1.S1_at--998--2111Chr03:36070485..36070509 (25 bp)
ACAGGTGTCTTTTCCCGATAATGGC
LOC_Os03g63940
Os.19126.1.S1_at--34--6471Chr03:36070501..36070525 (25 bp)
GATAATGGCCAACCAGAGTCTGTAA
LOC_Os03g63940
Os.19126.1.S1_at--891--9151Chr03:36070544..36070568 (25 bp)
TGCCCCTTCGTTACCAAAATGTCTG
LOC_Os03g63940
Os.19126.1.S1_at--751--7651Chr03:36070650..36070674 (25 bp)
GGGATGGGCGCTTAGAGACATATTT
LOC_Os03g63940
Os.19126.1.S1_at--607--1411Chr03:36070810..36070834 (25 bp)
AGAAATTACAGTCGGCTCCTTGCTT
LOC_Os03g63940
Os.19126.1.S1_at--314--9451Chr03:36070821..36070845 (25 bp)
TCGGCTCCTTGCTTGTTAGACAAAA
LOC_Os03g63940
Os.19126.1.S1_at--1038--10331Chr03:36070945..36070969 (25 bp)
TTTATGTCTAAACCGCAGCTTACTC
LOC_Os03g63940
Target Sequence 
TGTTCTCACAACTGCCGGAGTTAACAATAGCAGAAAAAAATTGTGAATCTCCAACATCGATCTCTCTGGCTTTTGGATCA
GACAGGTGTCTTTTCCCGATAATGGCCAACCAGAGTCTGTAAAGTCTTTTTTTTTTTCCCTTGCCCCTTCGTTACCAAAA
TGTCTGGTGATTTTTATTTATTGGATTGTTTTGCTGCTTGCTCGGTTTCTGAGCCCCCCAAGGAGTTAGTAGCTCTGTTG
AAAGGGTGGGATGGGCGCTTAGAGACATATTTTAGCATGAATCATCATCACAGGGAAGTAAGAATTGAAGGAAAGAGGGG
ATGCTCTGAAGCAAGAAGGATGAATTCAATGTGTTGTTTTTGCTCAACAACCGTTTTTTTGGCGGGCAGTGTTGCAACCA
TGAAAGGAGAAATTACAGTCGGCTCCTTGCTTGTTAGACAAAAAAAAAAAAAGAAAAAAAAGAAGAGAAAAACTATTGGA
TATCTGATGATGTAGTGACTGAGAAGCAGGAGTGGAGTTGTGTAAAACCTGTACCACCNTGATTTTTATGTCTAAACCGC
AGCTTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis