Browse Element(s) Details


Os.48429.1.S1_at

Description gb:U50333.1
DB_XREF= gi:1854636
TID=Os.48429.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48429 (NCBI UniGene Cluster)
DEF=Oryza sativa gibberellin C-20 oxidase mRNA, complete cds.
PROD=gibberellin C-20 oxidase
FL= gb:AK099111.1 gb:AK061017.1 gb:U50333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6397011/11Gibberellin 20 oxidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63940Os.19126.1.S1_at11/113+36063410..36070970protein kinase AKINbetagamma-2, putative, expressed
LOC_Os03g63950Os.11795.1.S1_a_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63950Os.11795.1.S1_s_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63970Os.48429.1.S1_at11/113+36089654..36091475Gibberellin 20 oxidase 1, putative, expressed
LOC_Os03g63980NANA3+36091846..36092469hypothetical protein
LOC_Os03g63990NANA3+36104984..36110492transposon protein, putative, Mutator sub-class
LOC_Os03g64010Os.54448.1.S1_s_at11/113+36114179..36118964expressed protein
LOC_Os03g64010Os.54448.1.S1_x_at5/113+36114179..36118964expressed protein
LOC_Os03g64010Os.11066.1.S1_at2/113+36114179..36118964expressed protein
LOC_Os03g64010Os.52532.1.S1_x_at1/113+36114179..36118964expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009639biological_processresponse to red or far red light
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0005737cellular_componentcytoplasm
GO:0016707molecular_functiongibberellin 3-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48429.1.S1_at--808--9031Chr03:36090780..36090804 (25 bp)
TGCACCGGGCGGTCGTCAACAGCAC
LOC_Os03g63970
Os.48429.1.S1_at--934--9231Chr03:36090831..36090855 (25 bp)
TCCTCTGCCCGGAGATGGACACGGT
LOC_Os03g63970
Os.48429.1.S1_at--814--2011Chr03:36090948..36090972 (25 bp)
ACTACAGGGCCGACATGCGCACGCT
LOC_Os03g63970
Os.48429.1.S1_at--433--10591Chr03:36090980..36091004 (25 bp)
TTCTCCGACTGGCTTAATCATCATC
LOC_Os03g63970
Os.48429.1.S1_at--781--411Chr03:36090999..36091023 (25 bp)
ATCATCGTCACCTGCAACCAACAAT
LOC_Os03g63970
Os.48429.1.S1_at--699--2451Chr03:36091018..36091042 (25 bp)
AACAATATACTCCTAGCTCCTAGTC
LOC_Os03g63970
Os.48429.1.S1_at--102--5051Chr03:36091035..36091059 (25 bp)
TCCTAGTCCTAGCTATATACTCCTA
LOC_Os03g63970
Os.48429.1.S1_at--80--571Chr03:36091074..36091098 (25 bp)
ATCCATCTTACACTACTATACCATT
LOC_Os03g63970
Os.48429.1.S1_at--1089--9731Chr03:36091131..36091155 (25 bp)
TAATTACTAGTTCCGGCTTAGATAT
LOC_Os03g63970
Os.48429.1.S1_at--779--8351Chr03:36091162..36091186 (25 bp)
GGCGATTATTTCAGTTCCTAGCTAC
LOC_Os03g63970
Os.48429.1.S1_at--825--3711Chr03:36091179..36091203 (25 bp)
CTAGCTACTCCTACATGCATGCTTT
LOC_Os03g63970
Target Sequence 
TGCACCGGGCGGTCGTCAACAGCACGGCGCCTCGCCGCTCGCTGGCCTTCTTCCTCTGCCCGGAGATGGACACGGTGGTG
CGCCCGCCGGAGGAGCTGGTCGACGACCACCACCCGAGGGTGTACCCGGACTTCACGTGGCGGGCGCTGCTGGACTTCAC
GCAGCGCCACTACAGGGCCGACATGCGCACGCTTCAGGCCTTCTCCGACTGGCTTAATCATCATCGTCACCTGCAACCAA
CAATATACTCCTAGCTCCTAGTCCTAGCTATATACTCCTATTATCCATCCATCCATCCATCTTACACTACTATACCATTA
GCATCGATCGATCATCCATTAATTAATTAATTAATTACTAGTTCCGGCTTAGATATATATCTGGCGATTATTTCAGTTCC
TAGCTACTCCTACATGCATGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis