Browse Element(s) Details


Os.54448.1.S1_x_at

Description gb:AK105192.1
DB_XREF= gi:32990401
TID=Os.54448.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D10, full insert sequence.
FL= gb:AK105192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g640105/11expressed protein
LOC_Os09g343403/11expressed protein
LOC_Os12g118302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63970Os.48429.1.S1_at11/113+36089654..36091475Gibberellin 20 oxidase 1, putative, expressed
LOC_Os03g63980NANA3+36091846..36092469hypothetical protein
LOC_Os03g63990NANA3+36104984..36110492transposon protein, putative, Mutator sub-class
LOC_Os03g64010Os.54448.1.S1_s_at11/113+36114179..36118964expressed protein
LOC_Os03g64010Os.54448.1.S1_x_at5/113+36114179..36118964expressed protein
LOC_Os03g64010Os.11066.1.S1_at2/113+36114179..36118964expressed protein
LOC_Os03g64010Os.52532.1.S1_x_at1/113+36114179..36118964expressed protein
LOC_Os03g64020Os.15427.1.S1_at11/113+36119589..36122138expressed protein
LOC_Os03g64030Os.51249.1.S1_at11/113+36123677..36125345expressed protein
LOC_Os03g64030Os.18556.1.S1_x_at10/113+36123677..36125345expressed protein
LOC_Os03g64050Os.15725.1.S1_at11/113+36128251..36129562expressed protein
LOC_Os03g64060OsAffx.25815.1.S1_s_at11/113+36132339..36132822expressed protein
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54448.1.S1_x_at--585--7511Chr03:36113887..36113911 (25 bp)
GTGGATCCTCCCCTCTTGCGCGGAT
NONE
Os.54448.1.S1_x_at--788--6371Chr03:36113909..36113933 (25 bp)
GATCCTCCACCAGTGACTGGATCTT
NONE
Os.54448.1.S1_x_at--1128--1111Chr03:36113920..36113944 (25 bp)
AGTGACTGGATCTTGTCCTCTCTCT
NONE
Os.54448.1.S1_x_at--382--9315Chr05:6716063..6716083 (21 bp)
TCCCTCCACTACTTCCGATGGGTGG
NONE
Os.54448.1.S1_x_at--957--2016Chr03:36114002..36114026 (25 bp)
ACTACTTCCGATGGGTGGATCCGGC
NONE
Os.54448.1.S1_x_at--420--4631Chr03:36114176..36114200 (25 bp)
GCGATGGCGGCAGCCGAGGGCGATT
NONE
Os.54448.1.S1_x_at--466--1071Chr03:36114192..36114216 (25 bp)
AGGGCGATTCGGCAGCAGTCGGTGG
LOC_Os03g64010
Os.54448.1.S1_x_at--129--4051Chr03:36114196..36114220 (25 bp)
CGATTCGGCAGCAGTCGGTGGTGGT
LOC_Os03g64010
Os.54448.1.S1_x_at--115--8631Chr03:36114214..36114238 (25 bp)
TGGTGGTGGCGTCAGTGATGGCCGT
LOC_Os03g64010
Os.54448.1.S1_x_at--265--9651Chr03:36114225..36114249 (25 bp)
TCAGTGATGGCCGTAGGTGGATCCG
LOC_Os03g64010
Os.54448.1.S1_x_at--1007--4233Chr03:36114265..36114289 (25 bp)
GCCGAGGGTGGATCCGGTCGCCTTT
LOC_Os03g64010
Target Sequence 
GTGGATCCTCCCCTCTTGCGCGGATCCTCCACCAGTGACTGGATCTTGTCCTCTCTCTGGCCGCTAGCGGCGGCCGCGGC
CTTCCCCACCGTGAGCAGCCACGGCGGCTCCCTCCACTACTTCCGATGGGTGGATCCGGCGGTGGCGGTGGCGGCGGCCG
AGGGCGGATCCGGCGGCAGTCGGTGGTGGTGGCGTCGGTGACGGCCGCGGCCTCTCTTCTGCTTTCGGTGGCGGTGGTGG
CGTTGGGTGGATCCGGCGGCAGCGGTGGCAGCGGCGAGTGGATCCGGCGGCGATGGCGGCAGCCGAGGGCGATTCGGCAG
CAGTCGGTGGTGGTGGCGTCAGTGATGGCCGTAGGTGGATCCGGCGGCGGTGGCGGCGGCCGAGGGTGGATCCGGTCGCC
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54448.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis