Browse Element(s) Details


Os.54448.1.S1_s_at

Description gb:AK105192.1
DB_XREF= gi:32990401
TID=Os.54448.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D10, full insert sequence.
FL= gb:AK105192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6401011/11expressed protein
LOC_Os12g118301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63970Os.48429.1.S1_at11/113+36089654..36091475Gibberellin 20 oxidase 1, putative, expressed
LOC_Os03g63980NANA3+36091846..36092469hypothetical protein
LOC_Os03g63990NANA3+36104984..36110492transposon protein, putative, Mutator sub-class
LOC_Os03g64010Os.54448.1.S1_s_at11/113+36114179..36118964expressed protein
LOC_Os03g64010Os.54448.1.S1_x_at5/113+36114179..36118964expressed protein
LOC_Os03g64010Os.11066.1.S1_at2/113+36114179..36118964expressed protein
LOC_Os03g64010Os.52532.1.S1_x_at1/113+36114179..36118964expressed protein
LOC_Os03g64020Os.15427.1.S1_at11/113+36119589..36122138expressed protein
LOC_Os03g64030Os.51249.1.S1_at11/113+36123677..36125345expressed protein
LOC_Os03g64030Os.18556.1.S1_x_at10/113+36123677..36125345expressed protein
LOC_Os03g64050Os.15725.1.S1_at11/113+36128251..36129562expressed protein
LOC_Os03g64060OsAffx.25815.1.S1_s_at11/113+36132339..36132822expressed protein
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54448.1.S1_s_at--4--5231Chr03:36114300..36114324 (25 bp)
GAATTTGTTTCTTTTTCGTGAATTG
LOC_Os03g64010
Os.54448.1.S1_s_at--277--10791Chr03:36114304..36114328 (25 bp)
TTGTTTCTTTTTCGTGAATTGGACA
LOC_Os03g64010
Os.54448.1.S1_s_at--991--6831Chr03:36114306..36114330 (25 bp)
GTTTCTTTTTCGTGAATTGGACATT
LOC_Os03g64010
Os.54448.1.S1_s_at--275--10571Chr03:36114308..36114332 (25 bp)
TTCTTTTTCGTGAATTGGACATTGG
LOC_Os03g64010
Os.54448.1.S1_s_at--917--3671Chr03:36114310..36114334 (25 bp)
CTTTTTCGTGAATTGGACATTGGGA
LOC_Os03g64010
Os.54448.1.S1_s_at--612--10371Chr03:36114312..36114336 (25 bp)
TTTTCGTGAATTGGACATTGGGATC
LOC_Os03g64010
Os.54448.1.S1_s_at--156--10611Chr03:36114314..36114338 (25 bp)
TTCGTGAATTGGACATTGGGATCAA
LOC_Os03g64010
Os.54448.1.S1_s_at--213--3991Chr03:36114316..36114340 (25 bp)
CGTGAATTGGACATTGGGATCAAGT
LOC_Os03g64010
Os.54448.1.S1_s_at--496--5191Chr03:36114319..36114343 (25 bp)
GAATTGGACATTGGGATCAAGTTCA
LOC_Os03g64010
Os.54448.1.S1_s_at--235--10851Chr03:36114322..36114346 (25 bp)
TTGGACATTGGGATCAAGTTCATGA
LOC_Os03g64010
Os.54448.1.S1_s_at--1133--5673Chr03:36114325..36114349 (25 bp)
GACATTGGGATCAAGTTCATGAGCT
LOC_Os03g64010
Target Sequence 
GAATTTGTTTCTTTTTCGTGAATTGGACATTGGGATCAAGTTCATGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54448.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis