Browse Element(s) Details


OsAffx.25815.1.S1_s_at

Description tigr:9631.m06351
TID=OsAffx.25815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6406011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63990NANA3+36104984..36110492transposon protein, putative, Mutator sub-class
LOC_Os03g64010Os.54448.1.S1_s_at11/113+36114179..36118964expressed protein
LOC_Os03g64010Os.54448.1.S1_x_at5/113+36114179..36118964expressed protein
LOC_Os03g64010Os.11066.1.S1_at2/113+36114179..36118964expressed protein
LOC_Os03g64010Os.52532.1.S1_x_at1/113+36114179..36118964expressed protein
LOC_Os03g64020Os.15427.1.S1_at11/113+36119589..36122138expressed protein
LOC_Os03g64030Os.51249.1.S1_at11/113+36123677..36125345expressed protein
LOC_Os03g64030Os.18556.1.S1_x_at10/113+36123677..36125345expressed protein
LOC_Os03g64050Os.15725.1.S1_at11/113+36128251..36129562expressed protein
LOC_Os03g64060OsAffx.25815.1.S1_s_at11/113+36132339..36132822expressed protein
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25815.1.S1_s_at--706--7771Chr03:36132733..36132757 (25 bp)
GGTGCAAGGCGACGTACGCGCCGTC
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--364--5151Chr03:36132706..36132730 (25 bp)
GCAACACGCGGCTCTCCTGCAGGTT
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--191--9271Chr03:36132692..36132716 (25 bp)
TCCTGCAGGTTCCACCCGTCGTATT
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--222--7911Chr03:36132685..36132709 (25 bp)
GGTTCCACCCGTCGTATTTCGTGTG
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--939--1791Chr03:36132679..36132703 (25 bp)
ACCCGTCGTATTTCGTGTGCCGGCG
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--587--4031Chr03:36132673..36132697 (25 bp)
CGTATTTCGTGTGCCGGCGCCACGA
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--729--4551Chr03:36132657..36132681 (25 bp)
GCGCCACGACGACCAGAAGAGGTAC
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--1151--5351Chr03:36132642..36132666 (25 bp)
GAAGAGGTACTACCAGCTTCGCGAC
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--207--1331Chr03:36132640..36132664 (25 bp)
AGAGGTACTACCAGCTTCGCGACGG
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--334--4391Chr03:36132599..36132623 (25 bp)
GCCAAGTTCTACGACTGCTGCGGCG
LOC_Os03g64060
OsAffx.25815.1.S1_s_at--899--9531Chr03:36132592..36132616 (25 bp)
TCTACGACTGCTGCGGCGCCGAGGA
LOC_Os03g64060
Target Sequence 
GGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGC
CACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGC
CGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25815.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis