Browse Element(s) Details


Os.21276.1.S1_at

Description gb:AK071705.1
DB_XREF= gi:32981728
TID=Os.21276.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109G23, full insert sequence.
FL= gb:AK104022.1 gb:AK071705.1 gb:AK059762.1 gb:AK061341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6407010/11Lysine Decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64010Os.54448.1.S1_s_at11/113+36114179..36118964expressed protein
LOC_Os03g64010Os.54448.1.S1_x_at5/113+36114179..36118964expressed protein
LOC_Os03g64010Os.11066.1.S1_at2/113+36114179..36118964expressed protein
LOC_Os03g64010Os.52532.1.S1_x_at1/113+36114179..36118964expressed protein
LOC_Os03g64020Os.15427.1.S1_at11/113+36119589..36122138expressed protein
LOC_Os03g64030Os.51249.1.S1_at11/113+36123677..36125345expressed protein
LOC_Os03g64030Os.18556.1.S1_x_at10/113+36123677..36125345expressed protein
LOC_Os03g64050Os.15725.1.S1_at11/113+36128251..36129562expressed protein
LOC_Os03g64060OsAffx.25815.1.S1_s_at11/113+36132339..36132822expressed protein
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64100Os.57012.1.S1_at10/113+36163263..36164076expressed protein
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21276.1.S1_at--962--2191Chr03:36143633..36143657 (25 bp)
ACAAGGCCGTCCACGAAGGCTTCGT
LOC_Os03g64070
Os.21276.1.S1_at--639--5831Chr03:36143704..36143728 (25 bp)
GACCTGCTCTGCAAGCTCGAGGAAT
LOC_Os03g64070
Os.21276.1.S1_at--227--2691Chr03:36143716..36143740 (25 bp)
AAGCTCGAGGAATACGTGCCGCCGC
LOC_Os03g64070
Os.21276.1.S1_at--644--8991Chr03:36143759..36143783 (25 bp)
TGAAGCTCACCTGGGAGATGTCCAC
LOC_Os03g64070
Os.21276.1.S1_at--753--10151Chr03:36143786..36143810 (25 bp)
TATCGGAGCAGCACGCCGGAAGCAT
LOC_Os03g64070
Os.21276.1.S1_at--777--1571Chr03:36143852..36143876 (25 bp)
AGCTACTCGATCCACTTCATTATTA
LOC_Os03g64070
Os.21276.1.S1_at--230--10331Chr03:36143886..36143910 (25 bp)
TTTCTTCTCATATAATCTTGCTGCT
LOC_Os03g64070
Os.21276.1.S1_at--789--431Chr03:36143900..36143924 (25 bp)
ATCTTGCTGCTAATTATTTCTTCCA
LOC_Os03g64070
Os.21276.1.S1_at--458--5011Chr03:36144026..36144050 (25 bp)
GCAGGCGGCCCTAGTTAGTTTTCCT
LOC_Os03g64070
Os.21276.1.S1_at--489--9751Chr03:36144115..36144139 (25 bp)
TAATTTGTTCTCTCATCATTTACTA
LOC_Os03g64070
Os.21276.1.S1_at--887--9891Chr03:36144135..36144159 (25 bp)
TACTAGTACACACGTTGTTTTGTTG
NONE
Target Sequence 
ACAAGGCCGTCCACGAAGGCTTCGTCTCGCCGCCCGCCCGCCGCATCATCGTCGCCGCACCCACCGCCTCCGACCTGCTC
TGCAAGCTCGAGGAATACGTGCCGCCGCCGCACGACGCCACCGCCCTGAAGCTCACCTGGGAGATGTCCACCGTATCGGA
GCAGCACGCCGGAAGCATCTACTCCCCCAAGCCCGACATGGCACGCTAGCTAGCTAGCTAGCTACTCGATCCACTTCATT
ATTACTTATCTTGTTTCTTCTCATATAATCTTGCTGCTAATTATTTCTTCCATATATTAATTCCCTATATATATGTATAT
ATACTCGATCGTACTATATTGTATACATCATCAATTACTTGTAACTTCAATTAATCCTAGCTACATCGAAGAGGCAGGCG
GCCCTAGTTAGTTTTCCTGTACTAGAAGCTAGTTAATTTTCCTCTATGGAGTGTTATTATGAGTTGATTGAGTNGGGAGT
ATTAATTTGTTCTCTCATCATTTACTAGTACACACGTTGTTTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis