Browse Element(s) Details


Os.8431.1.S1_at

Description gb:AK102968.1
DB_XREF= gi:32988177
TID=Os.8431.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full insert sequence.
FL= gb:AK058362.1 gb:AK102968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6411011/11WD domains, G-beta repeats containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64100Os.57012.1.S1_at10/113+36163263..36164076expressed protein
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8431.1.S1_at--690--6451Chr03:36170511..36170535 (25 bp)
GATCACATGAGTGTATCTCCTGATG
LOC_Os03g64110
Os.8431.1.S1_at--520--8851Chr03:36170534..36170558 (25 bp)
TGAGAAAGTTCTGGCCACGACAAGT
LOC_Os03g64110
Os.8431.1.S1_at--730--1851Chr03:36170550..36170574 (25 bp)
ACGACAAGTGGATCAACGCTGCAAT
LOC_Os03g64110
Os.8431.1.S1_at--61--3891Chr03:36171176..36171200 (25 bp)
CTGGGCTCCACGAACAATTCCAAAT
LOC_Os03g64110
Os.8431.1.S1_at--649--8171Chr03:36171495..36171519 (25 bp)
GGAACTCCTGCTTTTGTTTTAGCGA
LOC_Os03g64110
Os.8431.1.S1_at--884--4711Chr03:36171545..36171569 (25 bp)
GCTGTGGTTAGCTCCTAAGGCTATT
LOC_Os03g64110
Os.8431.1.S1_at--1131--6111Chr03:36171581..36171605 (25 bp)
GAGTGTGGTTGGATCCTGGTCACCC
LOC_Os03g64110
Os.8431.1.S1_at--997--7631Chr03:36171699..36171723 (25 bp)
GGGAGTCGTCAAACATAACATGCAG
LOC_Os03g64110
Os.8431.1.S1_at--285--7651Chr03:36171739..36171763 (25 bp)
GGGAGACACTGCACTTTTCTCTAAA
LOC_Os03g64110
Os.8431.1.S1_at--177--8531Chr03:36171783..36171807 (25 bp)
TGGAAATAGGTTGCCTGCTGCTCAC
LOC_Os03g64110
Os.8431.1.S1_at--760--10151Chr03:36171864..36171888 (25 bp)
TATCGAGTTCTCTTGCATTCAGTAT
LOC_Os03g64110
Target Sequence 
GATCACATGAGTGTATCTCCTGATGAGAAAGTTCTGGCCACGACAAGTGGATCAACGCTGCAATGGTTATGTGTGGAAAC
TGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATATAACTGGCATTGCCTGGGCTCCACGAACAATTCCAA
ATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATT
TCAACCTGAATGAGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGNGTGGGCACTGAAGGAAGAGAAAAAA
ACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTNACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAG
TTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAA
TTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAACTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis