Browse Element(s) Details


Os.56156.1.S1_at

Description gb:AK109467.1
DB_XREF= gi:32994676
TID=Os.56156.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C05, full insert sequence.
FL= gb:AK109467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6415011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64100Os.57012.1.S1_at10/113+36163263..36164076expressed protein
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56156.1.S1_at--406--5931Chr03:36185540..36185564 (25 bp)
GAGCATATACAGCTCAGACGCCGGG
LOC_Os03g64150
Os.56156.1.S1_at--41--6151Chr03:36185470..36185494 (25 bp)
GAGGTGGTGAACTTCCCGCTGAACG
LOC_Os03g64150
Os.56156.1.S1_at--336--3211Chr03:36185339..36185363 (25 bp)
CAAGGCCAGACTTGGGATCCAGGGC
LOC_Os03g64150
Os.56156.1.S1_at--878--10531Chr03:36185260..36185284 (25 bp)
TTCATCGCGCGCATGGATTGGCCCG
LOC_Os03g64150
Os.56156.1.S1_at--1049--2931Chr03:36185224..36185248 (25 bp)
AAGGCGCGGACTAGAACCACAGCAA
LOC_Os03g64150
Os.56156.1.S1_at--36--3151Chr03:36185190..36185214 (25 bp)
AATTCCACCAACACGACGAGGTCGT
LOC_Os03g64150
Os.56156.1.S1_at--252--7811Chr03:36185171..36185195 (25 bp)
GGTCGTCCAGCCTTGATTCATAAAC
LOC_Os03g64150
Os.56156.1.S1_at--271--6571Chr03:36185157..36185181 (25 bp)
GATTCATAAACCATGCATCCGATAG
LOC_Os03g64150
Os.56156.1.S1_at--1031--7811Chr03:36185132..36185156 (25 bp)
GGTAATTAGTTTCTGCATCCCGTTT
LOC_Os03g64150
Os.56156.1.S1_at--147--9051Chr03:36185119..36185143 (25 bp)
TGCATCCCGTTTGGGAATTACTCCT
LOC_Os03g64150
Os.56156.1.S1_at--148--7671Chr03:36185086..36185110 (25 bp)
GGGATTACTTGCTTGCATGAACAAC
LOC_Os03g64150
Target Sequence 
GAGCATATACAGCTCAGACGCCGGGGTGCGGGAGGGGGTGGGGAGGGCGATGGAGGTGATGGCGGTGCTGGAGGTGGTGA
ACTTCCCGCTGAACGTGTGCGGGGGGATAGTGCGAGGGACGGCGAGGCCGGCGGTGGGGATGTACGCCGTGGTGGCCGGC
TTCTACGTGCTGGCGCTGCCGCTCGGGGTCGCGCTCGCCTTCAAGGCCAGACTTGGGATCCAGGGCCTCCTCCTGGGCTT
CCTGGTGGGCGCCGCGGCCAGCTTGGCGGTGCTCCTCACCTTCATCGCGCGCATGGATTGGCCCGCCGAGGCCCAAAAGG
CGCGGACTAGAACCACAGCAACCGTGGCCCAATTCCACCAACACGACGAGGTCGTCCAGCCTTGATTCATAAACCATGCA
TCCGATAGGGTAATTAGTTTCTGCATCCCGTTTGGGAATTACTCCTTACTTTGGGGGATTACTTGCTTGCATGAACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis