Browse Element(s) Details


Os.7159.1.S1_at

Description gb:AK105297.1
DB_XREF= gi:32990506
TID=Os.7159.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H02, full insert sequence.
FL= gb:AK073135.1 gb:AK105297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6419010/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7159.1.S1_at--342--10571Chr03:36205019..36205043 (25 bp)
TTCTTTTTGTCTACCCTGTTATTGA
LOC_Os03g64190
Os.7159.1.S1_at--694--6951Chr03:36204993..36205017 (25 bp)
GTACCGTGAAGGTTTCAGCCTTTCA
LOC_Os03g64190
Os.7159.1.S1_at--1058--9631Chr03:36204979..36205003 (25 bp)
TCAGCCTTTCAGGTGGTTGGTAAAA
LOC_Os03g64190
Os.7159.1.S1_at--414--8251Chr03:36204821..36204845 (25 bp)
GGCACTCGAGTGCTTAATATTGCAA
LOC_Os03g64190
Os.7159.1.S1_at--671--4911Chr03:36204778..36204802 (25 bp)
GCTTGCGTGACTATGGGCCTGAAGT
LOC_Os03g64190
Os.7159.1.S1_at--762--7551Chr03:36204764..36204788 (25 bp)
GGGCCTGAAGTGTGCTGTGAACCAT
LOC_Os03g64190
Os.7159.1.S1_at--482--7971Chr03:36204691..36204715 (25 bp)
GGATCTGAACTTTCTCGCTCAGAGA
LOC_Os03g64190
Os.7159.1.S1_at--615--3211Chr03:36204645..36204669 (25 bp)
CAAGGATCTTTTGCAACTCAACTCG
LOC_Os03g64190
Os.7159.1.S1_at--1034--3691Chr03:36204583..36204607 (25 bp)
CTATGCATGATGTTTCCTTGGGTGA
LOC_Os03g64190
Os.7159.1.S1_at--23--10231Chr03:36204476..36204500 (25 bp)
TATTGCCTTTTGATGAGCTCTCTGC
LOC_Os03g64190
Os.7159.1.S1_at--352--5911Chr03:36204462..36204486 (25 bp)
GAGCTCTCTGCTTTGTACCGTCTGA
NONE
Target Sequence 
TTCTTTTTGTCTACCCTGTTATTGAGGTACCGTGAAGGTTTCAGCCTTTCAGGTGGTTGGTAAAAAAAAAAAGAAGTGCT
GTAGCTGAAACAAAAGACAGCAAACAGAAGGCATATGTAGAGGCATCAAAGAAGATGAGGGGGGTGGGGGGAGCCATTGG
ACATAATGAATGAAAGACGATGGTGCGCTAAGTTAAAAGGCACTCGAGTGCTTAATATTGCAACTGCTGAATGGCCTTTG
GGCTTGCGTGACTATGGGCCTGAAGTGTGCTGTGAACCATGTCGGTTTTCTCCCCCTGTTTGGATGTAACCCTCCAATTT
TTAAAGGAGGATCTGAACTTTCTCGCTCAGAGAGTCAGGAAGTTGACAATTCGACAAGGATCTTTTGCAACTCAACTCGT
TGAAGTAGCGTTTGAATGTTACAAGTTTTGCTAGAACTATGCATGATGTTTCCTTGGGTGATTGTGAAAGCCAAGCCTAT
TGGGAATTTGTGATAAGATGGCGATCCCCCATATTGAAACGATTTTCTGTAGCTCAAATAATTTATTGCCTTTTGATGAG
CTCTCTGCTTTGTACCGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis