Browse Element(s) Details


Os.49147.1.S1_x_at

Description gb:CB669414
DB_XREF= gi:29673139
DB_XREF=OSJNEe01O01.f
CLONE=OSJNEe01O01
TID=Os.49147.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29884 putative chaperonin 60 alpha subunit mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6421010/11RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein
LOC_Os03g64260Os.56144.1.S1_at11/113+36240425..36241341AP2 domain containing protein, expressed
LOC_Os03g64269NANA3+36245249..36245845hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0008219biological_processcell death
GO:0009627biological_processsystemic acquired resistance
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009790biological_processembryonic development
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49147.1.S1_x_at--110--991Chr03:36223437..36223461 (25 bp)
AGGAGATCGCCTTCGACCAGGGATC
LOC_Os03g64210
Os.49147.1.S1_x_at--309--7091Chr03:36223203..36223387 (25 bp)
GTCACCCTCGGTCCCAGAGGAAGAA
LOC_Os03g64210
Os.49147.1.S1_x_at--626--5751Chr03:36223137..36223161 (25 bp)
GACGGAGTTACCATTGCTCGAGCTA
LOC_Os03g64210
Os.49147.1.S1_x_at--973--5911Chr03:36223118..36223142 (25 bp)
GAGCTATTGAGCTCGCTGATCCAAT
LOC_Os03g64210
Os.49147.1.S1_x_at--63--4391Chr03:36223098..36223122 (25 bp)
CCAATGGAGAATGCCGGTGCTGCTT
LOC_Os03g64210
Os.49147.1.S1_x_at--895--4751Chr03:36223085..36223104 (20 bp)
GCTGCTTTGATTCGTGAGGTTGCCA
LOC_Os03g64210
Os.49147.1.S1_x_at--1122--3151Chr03:36222847..36222871 (25 bp)
AATTGGGCCTGCTGAGTGTTACTTC
LOC_Os03g64210
Os.49147.1.S1_x_at--173--5831Chr03:36222783..36222807 (25 bp)
GACCGTGCACAGTTTAGTTGAGGAA
LOC_Os03g64210
Os.49147.1.S1_x_at--287--2231Chr03:36222525..36222549 (25 bp)
ACAAGGTTGGCCCTGATGGTGTTCT
LOC_Os03g64210
Os.49147.1.S1_x_at--461--7751Chr03:36222508..36222532 (25 bp)
GGTGTTCTTTCGATCGAGTCATCAT
LOC_Os03g64210
Os.49147.1.S1_x_at--136--9611NONE
TCATCATCATCTTGTGAGACCACCG
NONE
Target Sequence 
AGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACC
CTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCG
AGCTATTGAGCTCGCTGATCCAATGGAGAATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAG
CAGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCA
AACCCAGTATCTATCAAAAAGGGCATAGATNAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGNCTGT
GAAGGGCAGTGGTGATATTAAAGCTGNNGCTGCCATATNTGCTGGAAATGATGACTNCGNCGGTACCATGATCGCNNAGG
CTATTGACAAGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTGTGAGACCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49147.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis