Browse Element(s) Details


Os.8776.1.S1_at

Description gb:AK071971.1
DB_XREF= gi:32981994
TID=Os.8776.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013087H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087H17, full insert sequence.
FL= gb:AK071971.1 gb:AK062741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6421911/11OTU-like cysteine protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein
LOC_Os03g64260Os.56144.1.S1_at11/113+36240425..36241341AP2 domain containing protein, expressed
LOC_Os03g64269NANA3+36245249..36245845hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8776.1.S1_at--1137--7751Chr03:36226670..36226694 (25 bp)
GGTGACCACGTTACATTGCAGGCTG
LOC_Os03g64219
Os.8776.1.S1_at--194--7051Chr03:36226082..36226106 (25 bp)
GTAAAGATTTTCATCCTGACATCAT
LOC_Os03g64219
Os.8776.1.S1_at--576--9591Chr03:36226061..36226085 (25 bp)
TCATTCAGAGATACTTGCTACATTG
LOC_Os03g64219
Os.8776.1.S1_at--284--8951Chr03:36226038..36226062 (25 bp)
TGAAATCCTTCCTGTTGTTCAGAAA
LOC_Os03g64219
Os.8776.1.S1_at--478--10191Chr03:36225766..36225790 (25 bp)
TATATGCTTGAGTTTTTGGGCTGAG
LOC_Os03g64219
Os.8776.1.S1_at--831--7771Chr03:36225742..36225766 (25 bp)
GGTGCACTACAACTCGATATATCCA
LOC_Os03g64219
Os.8776.1.S1_at--333--8631Chr03:36225587..36225611 (25 bp)
TGGTGGCATTTTTAGATCAGCAACT
LOC_Os03g64219
Os.8776.1.S1_at--64--6451Chr03:36225573..36225597 (25 bp)
GATCAGCAACTGGTGTACACTCCAT
LOC_Os03g64219
Os.8776.1.S1_at--893--11Chr03:36225550..36225574 (25 bp)
ATTGGGCTGGGTACACTCCATTTGA
LOC_Os03g64219
Os.8776.1.S1_at--130--7891Chr03:36225511..36225535 (25 bp)
GGTTAGATCAGTGGCCATTTTGTTG
LOC_Os03g64219
Os.8776.1.S1_at--15--7491Chr03:36225328..36225352 (25 bp)
GTGTGGAGCTATCTAAACCTCTTCT
LOC_Os03g64219
Target Sequence 
GGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTG
CTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACT
CGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGT
ACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATAT
GTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATG
TATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAGAATAGAGTAGCTGGGTGTGGAGCTA
TCTAAACCTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis