Browse Element(s) Details


Os.56144.1.S1_at

Description gb:AK109390.2
DB_XREF= gi:42821705
TID=Os.56144.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G07, full insert sequence.
FL= gb:AK109390.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6426011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein
LOC_Os03g64260Os.56144.1.S1_at11/113+36240425..36241341AP2 domain containing protein, expressed
LOC_Os03g64269NANA3+36245249..36245845hypothetical protein
LOC_Os03g64280Os.53291.1.S1_at11/113+36257304..36258584oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g64290NANA3+36258864..36275639Myosin head family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0042829biological_processdefense response to pathogen
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56144.1.S1_at--683--9711Chr03:36240824..36240848 (25 bp)
TCAACTTCCCCATGGAGCAGGTGAG
LOC_Os03g64260
Os.56144.1.S1_at--277--1531Chr03:36240809..36240833 (25 bp)
AGCAGGTGAGGCGTTCCATGGACAT
LOC_Os03g64260
Os.56144.1.S1_at--396--1611Chr03:36240647..36240671 (25 bp)
AGCTGGAGGACCTGGGACCTGACTA
LOC_Os03g64260
Os.56144.1.S1_at--412--1771Chr03:36240638..36240662 (25 bp)
ACCTGGGACCTGACTACCTGGAGGA
LOC_Os03g64260
Os.56144.1.S1_at--417--9971Chr03:36240624..36240648 (25 bp)
TACCTGGAGGAGCTGCTAGCCGCCT
LOC_Os03g64260
Os.56144.1.S1_at--468--4331Chr03:36240593..36240617 (25 bp)
CCATCGATATCACCTGCTGCACAAG
LOC_Os03g64260
Os.56144.1.S1_at--728--1991Chr03:36240557..36240581 (25 bp)
ACTCCATCTGATCTCTACTCGTATT
LOC_Os03g64260
Os.56144.1.S1_at--779--6871Chr03:36240537..36240561 (25 bp)
GTATTCCTCACACGCGCAGAGGATG
LOC_Os03g64260
Os.56144.1.S1_at--230--571Chr03:36240509..36240533 (25 bp)
ATCCTCTGCACTACACTTGTACTAG
LOC_Os03g64260
Os.56144.1.S1_at--669--7871Chr03:36240480..36240504 (25 bp)
GGTTAACATGTGGATCCGGTTCCAT
LOC_Os03g64260
Os.56144.1.S1_at--1053--551Chr03:36240467..36240491 (25 bp)
ATCCGGTTCCATGCTCTGATTGTTG
LOC_Os03g64260
Target Sequence 
TCAACTTCCCCATGGAGCAGGTGAGGCGTTCCATGGACATGTCCCTCCTGCAGGAAGGGGCGTCGCCGGTGGTGGCGCTG
AAGCGGCGGCACTCCATGCGAGCGGCAGCAGCGGGGCGGCGGCGCAAGAGCGCTGCACCTGCACCGGCGGATCAGGAAGG
CGGAGGAGGGGTGATGGAGCTGGAGGACCTGGGACCTGACTACCTGGAGGAGCTGCTAGCCGCCTCTCAGCCCATCGATA
TCACCTGCTGCACAAGCCCAAGCCACCACTCCATCTGATCTCTACTCGTATTCCTCACACGCGCAGAGGATGCACATCCT
CTGCACTACACTTGTACTAGCAGTGGTTAACATGTGGATCCGGTTCCATGCTCTGATTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis