Browse Element(s) Details


Os.53291.1.S1_at

Description gb:AK071828.1
DB_XREF= gi:32981851
TID=Os.53291.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118E08, full insert sequence.
FL= gb:AK071828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6428011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein
LOC_Os03g64260Os.56144.1.S1_at11/113+36240425..36241341AP2 domain containing protein, expressed
LOC_Os03g64269NANA3+36245249..36245845hypothetical protein
LOC_Os03g64280Os.53291.1.S1_at11/113+36257304..36258584oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g64290NANA3+36258864..36275639Myosin head family protein, expressed
LOC_Os03g64300Os.12770.1.S1_at11/113+36279017..36285874Transcriptional corepressor LEUNIG, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53291.1.S1_at--80--1371Chr03:36258067..36258091 (25 bp)
AGAGCAAGGGCCTGCAGGTGCTCAT
LOC_Os03g64280
Os.53291.1.S1_at--640--9051Chr03:36258079..36258103 (25 bp)
TGCAGGTGCTCATGAGGCAGCGCCA
LOC_Os03g64280
Os.53291.1.S1_at--38--3931Chr03:36258131..36258155 (25 bp)
CGGCGCTCTGGTGGTCAACATCGGC
LOC_Os03g64280
Os.53291.1.S1_at--150--9231Chr03:36258163..36258187 (25 bp)
TCCAGCTAGTGTCCAACGACCTCTT
LOC_Os03g64280
Os.53291.1.S1_at--89--1871Chr03:36258178..36258202 (25 bp)
ACGACCTCTTCCGAAGCGTGGAGCA
LOC_Os03g64280
Os.53291.1.S1_at--664--8531Chr03:36258196..36258220 (25 bp)
TGGAGCACCGGGTGTTGGCAACCAC
LOC_Os03g64280
Os.53291.1.S1_at--570--6691Chr03:36258347..36258371 (25 bp)
GTTCCTCTCGCATTACAGAGCCAAA
LOC_Os03g64280
Os.53291.1.S1_at--974--3651Chr03:36258418..36258442 (25 bp)
CTTCATCTCCACCACATTAATTTTT
LOC_Os03g64280
Os.53291.1.S1_at--919--10471Chr03:36258455..36258479 (25 bp)
TTACAGATATGCTCCGTACCTTCGG
LOC_Os03g64280
Os.53291.1.S1_at--707--9431Chr03:36258476..36258500 (25 bp)
TCGGACTCGTACTACTTTAATTAAT
LOC_Os03g64280
Os.53291.1.S1_at--349--231Chr03:36258551..36258575 (25 bp)
ATATATCATCCATCGGGACTATTTG
LOC_Os03g64280
Target Sequence 
AGAGCAAGGGCCTGCAGGTGCTCATGAGGCAGCGCCAGCGGTGGGTGGACGTCCCTCCGGTGGCCGGCGCTCTGGTGGTC
AACATCGGCGACCTCCTCCAGCTAGTGTCCAACGACCTCTTCCGAAGCGTGGAGCACCGGGTGTTGGCAACCACCGCCGC
CGCGGAGCCTCGCCTCTCCGTCGCCTGCTTCTTCCGTCCCGACTACGCCTGCACCAGGGTGTACGCCCCCGTCACCACCA
CGCCGCCGCCACCGCTCTACAGGAGCACCACCATGCCGGAGTTCCTCTCGCATTACAGAGCCAAAGGCCTCGACGGCCGA
TCCGCGCTCCACCACTTCAGGATCCCTCCTCCTTCATCTCCACCACATTAATTTTTTTTCTTAATTTCTTACAGATATGC
TCCGTACCTTCGGACTCGTACTACTTTAATTAATTACAGTATATATGTATGNACGTATATATATATTCACATGATGCATT
CATCATATATCATCCATCGGGACTATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis