Browse Element(s) Details


Os.56325.1.S1_at

Description gb:AK109857.1
DB_XREF= gi:32995066
TID=Os.56325.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-G08, full insert sequence.
FL= gb:AK109857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6417011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56325.1.S1_at--437--2471Chr03:36197216..36197240 (25 bp)
AACACAATCAATGCACTGGTCCTTA
LOC_Os03g64170
Os.56325.1.S1_at--146--351Chr03:36197147..36197171 (25 bp)
ATAAAATTGTGTTCTTCTTTCTCCA
LOC_Os03g64170
Os.56325.1.S1_at--509--5131Chr03:36197106..36197130 (25 bp)
GCAAATAATGTAGCCCGCATAGTAT
LOC_Os03g64170
Os.56325.1.S1_at--1092--10231Chr03:36196908..36196932 (25 bp)
TTTGGACGACAGACGACATCGACAT
LOC_Os03g64170
Os.56325.1.S1_at--243--653Chr05:17543491..17543698 (25 bp)
ATGCATGCATGGACAGGCCATCTCC
NONE
Os.56325.1.S1_at--565--9731Chr03:36196843..36196867 (25 bp)
TCAATCCGCCATCATCAATTTCATT
LOC_Os03g64170
Os.56325.1.S1_at--176--9871Chr03:36196803..36196827 (25 bp)
TACAGTTGTATATCACGCGCCATTC
LOC_Os03g64170
Os.56325.1.S1_at--326--4171Chr03:36196786..36196810 (25 bp)
CGCCATTCTTTATTTTGCATCCATC
LOC_Os03g64170
Os.56325.1.S1_at--1085--451Chr03:36196764..36196788 (25 bp)
ATCTCTCATCCTTATTCCATGCAGG
LOC_Os03g64170
Os.56325.1.S1_at--1057--10331Chr03:36196707..36196731 (25 bp)
TTTAGTTGCCGGTACTGCAGTTGCT
LOC_Os03g64170
Os.56325.1.S1_at--174--8951Chr03:36196683..36196707 (25 bp)
TGACTTGCTGTACTACTTACCTACT
LOC_Os03g64170
Target Sequence 
AACACAATCAATGCACTGGTCCTTAAGACAAGAAACCTTTTGATGCCATTTATATTTGTGAGAACGAGTATAAAATTGTG
TTCTTCTTTCTCCACCATACATGCATGCATGCAAATAATGTAGCCCGCATAGTATATATACTAGTATAGTAGTAGTGAGA
AATTAATTAATGGAAATACTAGCTACAACTACGTACAATACCAAGTATAGGTGGAGATATATGCATGCATGCATGAGTAG
GTGCGTGCAGGGCGGCGTTATTAGCTGGCCGCCGCGTGGTGTACATGCATGGCGATGGTGATGGTTAATTTGGACGACAG
ACGACATCGACATGCATGCATGGACAGGCCATCTCCGCCTCACCTCCGATCGATCAATCCGCCATCATCAATTTCATTCA
TCATTTAATACACTACAGTTGTATATCACGCGCCATTCTTTATTTTGCATCCATCTCTCATCCTTATTCCATGCAGGACT
GTATATGTGCATGAGCTATCATTAATTAATTTAGTTGCCGGTACTGCAGTTGCTGACTTGCTGTACTACTTACCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis