Browse Element(s) Details


Os.57012.1.S1_at

Description gb:AK110744.1
DB_XREF= gi:32995953
TID=Os.57012.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F11, full insert sequence.
FL= gb:AK110744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6410010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64100Os.57012.1.S1_at10/113+36163263..36164076expressed protein
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57012.1.S1_at--158--2851NONE
AAGTACACCGCCACCATGCATATGC
NONE
Os.57012.1.S1_at--682--4331Chr03:36163598..36163622 (25 bp)
CCATGCATATGCTGATCAGGCCGAG
LOC_Os03g64100
Os.57012.1.S1_at--146--8711Chr03:36163496..36163520 (25 bp)
TGTCCATTCCATCTGGTTCAGGCCT
LOC_Os03g64100
Os.57012.1.S1_at--729--9631Chr03:36163479..36163503 (25 bp)
TCAGGCCTCTCTGGGATTCTGCTGA
LOC_Os03g64100
Os.57012.1.S1_at--23--7051Chr03:36163445..36163469 (25 bp)
GTAACTAGCTACCTACTTCTACGGT
LOC_Os03g64100
Os.57012.1.S1_at--953--10571Chr03:36163421..36163445 (25 bp)
TTCTACTCCACCTTGCAGCTATAAT
LOC_Os03g64100
Os.57012.1.S1_at--550--5051Chr03:36163407..36163431 (25 bp)
GCAGCTATAATTTACTCATCTACCT
LOC_Os03g64100
Os.57012.1.S1_at--848--9891Chr03:36163395..36163419 (25 bp)
TACTCATCTACCTACCTAGCATATA
LOC_Os03g64100
Os.57012.1.S1_at--619--9231Chr03:36163336..36163360 (25 bp)
TCCATCCATATGTAATACGCTGTCT
LOC_Os03g64100
Os.57012.1.S1_at--532--1831Chr03:36163320..36163344 (25 bp)
ACGCTGTCTCTTATTTGATCTCTAG
LOC_Os03g64100
Os.57012.1.S1_at--886--451Chr03:36163303..36163327 (25 bp)
ATCTCTAGCTCGTATATACTCCATC
LOC_Os03g64100
Target Sequence 
AAGTACACCGCCACCATGCATATGCTGATCAGGCCGAGGCTGCAGGGAGCGGGTCGCCGTGGGTTGTGGCGCTGCTGCTG
CTGCTGTTGCTGCTCATGCTCTCCTTCCAATCCTCTGTCCATTCCATCTGGTTCAGGCCTCTCTGGGATTCTGCTGATTA
CTAGTAGTAACTAGCTACCTACTTCTACGGTTCTACTCCACCTTGCAGCTATAATTTACTCATCTACCTACCTAGCATAT
ACTATATATTATCTATCTATACATACAGGAATTAATCCATCCATATGTAATACGCTGTCTCTTATTTGATCTCTAGCTCG
TATATACTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis