Browse Element(s) Details


Os.9010.4.S1_x_at

Description gb:AK058786.1
DB_XREF= gi:32968804
TID=Os.9010.4
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E01, full insert sequence.
FL= gb:AK058786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g639105/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63870Os.53006.1.S1_at11/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52319.1.S1_x_at3/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52311.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870OsAffx.22945.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870Os.49936.2.A1_at1/113+36021354..36035469expressed protein
LOC_Os03g63870Os.38237.1.S1_s_at1/113+36021354..36035469expressed protein
LOC_Os03g63880OsAffx.13596.1.S1_at11/113+36036153..36037240hypothetical protein
LOC_Os03g63890NANA3+36039442..36039871myb family transcription factor, putative
LOC_Os03g63900Os.21024.1.S1_at11/113+36042503..36044053oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g63910Os.27221.1.A1_at11/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63910Os.9010.4.S1_x_at5/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63920Os.9010.3.S1_x_at10/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63920Os.9010.1.S1_x_at6/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63930Os.15249.1.S1_at11/113+36058608..36060953Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os03g63940Os.19126.1.S1_at11/113+36063410..36070970protein kinase AKINbetagamma-2, putative, expressed
LOC_Os03g63950Os.11795.1.S1_a_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63950Os.11795.1.S1_s_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9010.4.S1_x_at--614--951Chr03:36049469..36049493 (25 bp)
AGGAAAGGCTGCACTGGCGTTCTTT
LOC_Os03g63910
Os.9010.4.S1_x_at--612--2851NONE
AAGTCCGTCTCTATTGTTTATACAA
NONE
Os.9010.4.S1_x_at--649--4811Chr03:36050520..36050540 (21 bp)
GCTCTGGCCGAGGTGATATTTGCAA
LOC_Os03g63910
Os.9010.4.S1_x_at--664--1931Chr03:36050579..36050603 (25 bp)
ACGGAGAGGCTCTTCCTTGACAAAT
LOC_Os03g63910
Os.9010.4.S1_x_at--13--1011Chr03:36050609..36050633 (25 bp)
AGGATCTGCTTGTGCCTTGATGAGA
LOC_Os03g63910
Os.9010.4.S1_x_at--407--6111Chr03:36050784..36050808 (25 bp)
GAGTCCGGAGGTTGATCAGGCTAAA
LOC_Os03g63910
Os.9010.4.S1_x_at--887--4151Chr03:36050811..36050835 (25 bp)
CGCCCGTTGAGCCATGATTTTTTGA
NONE
Os.9010.4.S1_x_at--614--5231Chr03:36050844..36050868 (25 bp)
GAATATGTGTGTATCCTTCTCGTCG
NONE
Os.9010.4.S1_x_at--1029--4011Chr03:36050864..36050888 (25 bp)
CGTCGTGTAATCATATCTCTCGCAG
NONE
Os.9010.4.S1_x_at--926--451Chr03:36050878..36050902 (25 bp)
ATCTCTCGCAGTTTATTTGCTGGCA
NONE
Os.9010.4.S1_x_at--1057--10251Chr03:36050975..36050999 (25 bp)
TTTGTACTGTTACACTACTCTCCGT
NONE
Target Sequence 
AGGAAAGGCTGCACTGGCGTTCTTTCCTCGTCAAGCTTGGCGCCGACAACCTCAAGGGGGCCAAGAACGAGGAGCTCCTC
GTTGCCTCTCACAAGTCCGTCTCTATTGTTTATACAATGATTGGGGATGTCTGCCTGTACATTGTTGGCAAGGATGAATA
TGATGAGCTTGCTCTGGCCGAGGTGATATTTGCAATCACATCGGCAGTGAAGGATGTATGTGGGAAACCGCCTACGGAGA
GGCTCTTCCTTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAGGGTCTGCTGGAGAACACGGAG
AAGGACAGAGTCCGGAGGTTGATCAGGCTAAAGCCGCCCGTTGAGCCATGATTTTTTGATCACTTTGGAATATGTGTGTA
TCCTTCTCGTCGTGTAATCATATCTCTCGCAGTTTATTTGCTGGCAGTTGTTTTTTTATTCCCTTTGGGATGGATGATTC
TGTATGTGTACAATCCTAATACATTTTGCCACTGATGATTTGTACTGTTACACTACTCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9010.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis