Browse Element(s) Details


Os.52311.1.S1_at

Description gb:AK066302.1
DB_XREF= gi:32976320
TID=Os.52311.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061N12, full insert sequence.
FL= gb:AK066302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0588011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g263293/11retrotransposon protein, putative, unclassified
LOC_Os03g638702/11expressed protein
LOC_Os08g241201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g268101/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05890Os.27691.1.S1_x_at1/115+2936678..2940565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.2.S1_x_at3/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.1.S1_x_at1/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05910NANA5+2942544..2944705retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05920OsAffx.14560.1.S1_at11/115+2945594..2946690Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os05g05930NANA5+2947630..2948211hypothetical protein
LOC_Os05g05940Os.19814.1.S1_at11/115+2948872..2950773Rubber elongation factor protein containing protein, expressed
LOC_Os05g05950Os.9224.1.S1_at11/115+2951707..2956067chloroplast outer membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52311.1.S1_at--934--58921Chr11:11273798..11273822 (25 bp)
GAGCTAAGCCTTGACTAGAACTGTA
NONE
Os.52311.1.S1_at--104--1836Chr11:11273811..11273835 (25 bp)
ACTAGAACTGTAGCGGGAACACCAC
NONE
Os.52311.1.S1_at--1111--80550Chr12:20381952..20381976 (25 bp)
GGAGAAACCTCCATCTGACACATAC
NONE
Os.52311.1.S1_at--1107--474Chr05:2933850..2933874 (25 bp)
ATCTGACACATACCCGAACTCTGGG
LOC_Os05g05880
Os.52311.1.S1_at--5--90579Chr12:1446545..1446569 (25 bp)
TGCAGGGAATTATCAAAGGAGAGCT
NONE
Os.52311.1.S1_at--721--1351Chr05:2933967..2933991 (25 bp)
AGAGCTAGAGTGGTTCAGTTGCATA
LOC_Os05g05880
Os.52311.1.S1_at--599--96527Chr12:18126568..18126588 (21 bp)
TCAGTTGCATAAAGCGAGCATTTAT
NONE
Os.52311.1.S1_at--220--267153Chr12:1446589..1446613 (25 bp)
AAGCGAGCATTTATAAACAGAAGTT
NONE
Os.52311.1.S1_at--359--104197Chr12:5175474..5175498 (25 bp)
TTATTAACTATCCACTGTCCAACGC
NONE
Os.52311.1.S1_at--350--104975Chr12:12284298..12284322 (25 bp)
TTAACTATCCACTGTCCAACGCTAT
NONE
Os.52311.1.S1_at--134--26129Chr12:15020143..15020167 (25 bp)
AACGCTATCCCACGTTGCGACAGGC
NONE
Target Sequence 
GAGCTAAGCCTTGACTAGAACTGTAGCGGGAACACCACTCCACAGGCACCCTCGATGGCACGGACGAAGCCTACTCCTCG
GAGAAACCTCCATCTGACACATACCCGAACTCTGGGGTTGGGAAAAAAAAAGAGCAAGACTGAGTACTACCCACTGTACT
CAGCAAGTCATACCGGAATAGGGGTATGATGCAGGGAATTATCAAAGGAGAGCTAGAGTGGTTCAGTTGCATAAAGCGAG
CATTTATAAACAGAAGTTGAAAGATTTAAACAGTTGTAATAATTAATTATTATTAACTATCCACTGTCCAACGCTATCCC
ACGTTGCGACAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis