Browse Element(s) Details


OsAffx.18625.1.S1_at

Description tigr:9633.m00504
TID=OsAffx.18625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dna-directed rna polymerase ii largest subunit (ec 2.7.7.6). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0586010/11DNA-directed RNA polymerase II largest subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05890Os.27691.1.S1_x_at1/115+2936678..2940565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.2.S1_x_at3/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.1.S1_x_at1/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05910NANA5+2942544..2944705retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05920OsAffx.14560.1.S1_at11/115+2945594..2946690Desiccation-related protein PCC13-62 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0005199molecular_functionstructural constituent of cell wall
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18625.1.S1_at--692--5671Chr05:2915298..2915322 (25 bp)
GACTTCTCCTGTATATAACCCAACT
LOC_Os05g05860
OsAffx.18625.1.S1_at--418--6891Chr05:2915288..2915312 (25 bp)
GTATATAACCCAACTTCTTCTGCAT
LOC_Os05g05860
OsAffx.18625.1.S1_at--396--7091Chr05:2915025..2915049 (25 bp)
GTCACCCTCATATAGTCCGACATCG
LOC_Os05g05860
OsAffx.18625.1.S1_at--343--291Chr05:2915014..2915038 (25 bp)
ATAGTCCGACATCGTCTGCATACAG
LOC_Os05g05860
OsAffx.18625.1.S1_at--231--9251Chr05:2914905..2914929 (25 bp)
TCCTTCTTCGGTCAAGTACACGCCT
LOC_Os05g05860
OsAffx.18625.1.S1_at--731--10611Chr05:2914899..2914923 (25 bp)
TTCGGTCAAGTACACGCCTTCACAT
LOC_Os05g05860
OsAffx.18625.1.S1_at--49--2851Chr05:2914892..2914916 (25 bp)
AAGTACACGCCTTCACATGCATACT
LOC_Os05g05860
OsAffx.18625.1.S1_at--593--10511Chr05:2914881..2914905 (25 bp)
TTCACATGCATACTCTCCAAGCAGC
LOC_Os05g05860
OsAffx.18625.1.S1_at--307--3811Chr05:2914867..2914891 (25 bp)
CTCCAAGCAGCCCAAATTACTACAG
LOC_Os05g05860
OsAffx.18625.1.S1_at--5--3151Chr05:2914746..2914877 (25 bp)
AATTACTACAGCTCAACATCGCCGA
LOC_Os05g05860
OsAffx.18625.1.S1_at--859--331NONE
ATACAGCCCAACAAGTCGAGTGGAA
NONE
Target Sequence 
GACTTCTCCTGTATATAACCCAACTTCTTCTGCATACAGCCCCACATCACCATCTTATAACCCTACATCGCCGTCTTACA
GTTACAGCCCCACATCACCATCTTATAGCCCCACATCGCCGTCTTACAGTTACAGCCCCACATCACCATCTTATAGCCCC
ACATCGCCGTCTTACAATTACAGCCCCACATCACCGTCATATAGCCCAACATCGCCGTCTTACAGCCCCACATCACCATC
ATACAGCCCAACATCGCCGTCTTACAGTCCGACGTCACCCTCATATAGTCCGACATCGTCTGCATACAGCCCTACTTCGC
CTGCATACAGCCCAACATCTCCTGGCTACAGCCCAACATCTCCAAGCTACAGCCCATCTTCGCCAAGCTACAATCCTTCT
TCGGTCAAGTACACGCCTTCACATGCATACTCTCCAAGCAGCCCAAATTACTACAGCTCAACATCGCCGACATACTCACC
TACCTCACCATCATACTCGCAACCAAGCCCGTCATACAGCCCAACAAGTCGAGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis