Browse Element(s) Details


Os.3394.1.S1_at

Description gb:AK099789.1
DB_XREF= gi:32984998
TID=Os.3394.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3394 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA histidyl tRNA synthetase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097A18, full insert sequence.
FL= gb:AK059520.1 gb:AK099789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0584011/11Histidyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006427biological_processhistidyl-tRNA aminoacylation
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004672molecular_functionprotein kinase activity
GO:0004821molecular_functionhistidine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3394.1.S1_at--381--2731Chr05:2906802..2906826 (25 bp)
AAGCAAGTCCCTGCCGTTGGTGTTA
LOC_Os05g05840
Os.3394.1.S1_at--1003--9151Chr05:2906791..2906815 (25 bp)
TGCCGTTGGTGTTAGCCTTGGAATA
LOC_Os05g05840
Os.3394.1.S1_at--374--6071Chr05:2906762..2906786 (25 bp)
GAGTTTTCGCAATCATGGAGCAACA
LOC_Os05g05840
Os.3394.1.S1_at--573--7211Chr05:2906613..2906637 (25 bp)
GTCGATTATCGGCAAGGACCTCATA
LOC_Os05g05840
Os.3394.1.S1_at--813--5171Chr05:2906602..2906626 (25 bp)
GCAAGGACCTCATATTGGCCGCTGA
LOC_Os05g05840
Os.3394.1.S1_at--212--8471Chr05:2906587..2906611 (25 bp)
TGGCCGCTGAGCTTGTTAGTGAACT
LOC_Os05g05840
Os.3394.1.S1_at--920--2631Chr05:2906513..2906537 (25 bp)
AACCACTTGAAGTACGCGACGCAAT
LOC_Os05g05840
Os.3394.1.S1_at--602--5791Chr05:2906496..2906520 (25 bp)
GACGCAATCTGGCATTCCGTGGATG
LOC_Os05g05840
Os.3394.1.S1_at--476--6331Chr05:2906297..2906321 (25 bp)
GATGCATCATACTTGCCTGTGTGAG
LOC_Os05g05840
Os.3394.1.S1_at--163--9292Chr05:2906260..2906284 (25 bp)
TCCGTTCGGCGTTTTGATTTATACT
LOC_Os05g05840
Os.3394.1.S1_at--1089--131Chr05:2906168..2906192 (25 bp)
ATTACTCTACTGATTGGTGACCAAC
LOC_Os05g05840
Target Sequence 
AAGCAAGTCCCTGCCGTTGGTGTTAGCCTTGGAATAGAAAGAGTTTTCGCAATCATGGAGCAACAGGAGATGGAAAAGAA
TCAGATCCGGGCCACCGAGACGGAGGTATTGGTGTCGATTATCGGCAAGGACCTCATATTGGCCGCTGAGCTTGTTAGTG
AACTGTGGAATGCTGGGATAAAGGCAGAGTTCAAACTCACTACTAGGATACAGAACCACTTGAAGTACGCGACGCAATCT
GGCATTCCGTGGATGGTGCTGGTTGGTGAGTCTGAAATAAGCAGTGGAAAGGTGAAGCTGAAGAACTTGGCAGCCAGCCA
GGAAGAGGAGGTTGACAGGACAGAGTTTGCTCAGGTGTTGAAACAGAAATTGAGAAACCCATAGAGAAGATTTTTAGAAT
ATAATTTTGTAGTTCATGTTTCAACTTGTGATGCATCATACTTGCCTGTGTGAGTTCCTGGAAAATTCCGTTCGGCGTTT
TGATTTATACTGGCTGTTTGAATTGGTTTACATGTTAAAGCGCTTGGTGTAATTGAATCAAATTACCAAATTCAAAACAT
TACTCTACTGATTGGTGACCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis