Browse Element(s) Details


Os.32467.1.S1_at

Description gb:AK104502.1
DB_XREF= gi:32989711
TID=Os.32467.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F01, full insert sequence.
FL= gb:AK060882.1 gb:AK104502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g058308/11C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009396biological_processfolic acid and derivative biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32467.1.S1_at--315--8431Chr05:2905647..2905671 (25 bp)
GGCCAGGCTATGATGGTACATTGTT
LOC_Os05g05830
Os.32467.1.S1_at--1126--911Chr05:2905651..2905675 (25 bp)
AGGCTATGATGGTACATTGTTCTAC
LOC_Os05g05830
Os.32467.1.S1_at--345--711Chr05:2905656..2905680 (25 bp)
ATGATGGTACATTGTTCTACCACCA
LOC_Os05g05830
Os.32467.1.S1_at--627--6251Chr05:2905658..2905682 (25 bp)
GATGGTACATTGTTCTACCACCAAA
LOC_Os05g05830
Os.32467.1.S1_at--102--8591Chr05:2905660..2905684 (25 bp)
TGGTACATTGTTCTACCACCAAATT
LOC_Os05g05830
Os.32467.1.S1_at--18--7031Chr05:2905662..2905686 (25 bp)
GTACATTGTTCTACCACCAAATTAT
LOC_Os05g05830
Os.32467.1.S1_at--566--2051Chr05:2905664..2905688 (25 bp)
ACATTGTTCTACCACCAAATTATGA
LOC_Os05g05830
Os.32467.1.S1_at--1134--11Chr05:2905666..2905690 (25 bp)
ATTGTTCTACCACCAAATTATGACA
LOC_Os05g05830
Os.32467.1.S1_at--13--3871Chr05:2906120..2906144 (25 bp)
CTGATGTTTGTCTGATAAATGCGAA
NONE
Os.32467.1.S1_at--991--6271NONE
GATGTTTGTCTGATAAATGCGAAGA
NONE
Os.32467.1.S1_at--749--3011NONE
AATGCGAAGATAATGTGCATGGTCA
NONE
Target Sequence 
GGCCAGGCTATGATGGTACATTGTTCTACCACCAAATTATGACATGGTTCATCACAATNCANNNNNNNNNNNNNNNNNNA
NNNNNCNNGNTNGNNNGATCAAAGGAGANTGGATCAANCCAGGCGCTGCTGTCATCGANGTTGGGACGAACTCCATCAGT
GACCCAANCAGGAAATCGGGGTACAGACTCGTCGNCGATGTGGATTTCGCAGAGGTGAGCAAGGTTGCTGNTCACCTGAC
TCCAGTCCCAGGTGGCGTTGGCCCCATGACGGTGGCGANGTTGNTGAAGAACACGGTGGATGGAGCGAAACGTGGTATAG
TTCAGTAAAGTTTCCATCTTGTATGCTGTAACTGCAAGGATGATGTTGTAATTGAGTGCATTTCTGGACAAATTCGTTCT
CATTTTTGTTGTGTGACGGTTATTTCGAGAATAATAAGAATAAGTTTGTCTGTCATCAANNANNNNNNANNANCTGATGT
TTGTCTGATAAATGCGAAGATAATGTGCATGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis