Browse Element(s) Details


OsAffx.14559.1.S1_at

Description tigr:9633.m00503
TID=OsAffx.14559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g058509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14559.1.S1_at--1051--9711Chr05:2910670..2910694 (25 bp)
TCAACCATCCCAATCACAGCGGCGG
NONE
OsAffx.14559.1.S1_at--716--2151Chr05:2910685..2910709 (25 bp)
ACAGCGGCGGCCGATGAAGGAAATC
NONE
OsAffx.14559.1.S1_at--546--2271Chr05:2910705..2910729 (25 bp)
AAATCGCGGTGGGTCGGCGCTGGAA
LOC_Os05g05850
OsAffx.14559.1.S1_at--139--951Chr05:2910749..2910773 (25 bp)
AGGAAGGCAGTGTCCTGCTCCACCA
LOC_Os05g05850
OsAffx.14559.1.S1_at--857--2931Chr05:2910752..2910776 (25 bp)
AAGGCAGTGTCCTGCTCCACCAACA
LOC_Os05g05850
OsAffx.14559.1.S1_at--1015--2471Chr05:2910773..2910797 (25 bp)
AACACCGACGCTCGCGAGGTGCTCT
LOC_Os05g05850
OsAffx.14559.1.S1_at--1138--5791Chr05:2910779..2910803 (25 bp)
GACGCTCGCGAGGTGCTCTTCCTTT
LOC_Os05g05850
OsAffx.14559.1.S1_at--225--6191Chr05:2910811..2910835 (25 bp)
GAGGACGACGCGTCTCCATCTCTGC
LOC_Os05g05850
OsAffx.14559.1.S1_at--430--4131Chr05:2910855..2910879 (25 bp)
CGCATCGCCGGGTTAGGGAGGGTGA
LOC_Os05g05850
OsAffx.14559.1.S1_at--991--8211Chr05:2910890..2910914 (25 bp)
GGCAGCGTACTTGTTGCGGTGGCAG
LOC_Os05g05850
OsAffx.14559.1.S1_at--963--411Chr05:2910936..2910960 (25 bp)
ATCATGTTGCCAACGGCCGCGGCGG
LOC_Os05g05850
Target Sequence 
TCAACCATCCCAATCACAGCGGCGGCCGATGAAGGAAATCGCGGTGGGTCGGCGCTGGAAGCCGGCGGCGCGGGGAGGCA
GGAAGGCAGTGTCCTGCTCCACCAACACCGACGCTCGCGAGGTGCTCTTCCTTTCCCCGCCGAGGACGACGCGTCTCCAT
CTCTGCGTCTACTTCCGCTTCACCGCGCATCGCCGGGTTAGGGAGGGTGATGTCAGCGGCGGCAGCGTACTTGTTGCGGT
GGCAGGTGTTCGTCTGCAGCGCCCTCATCATGTTGCCAACGGCCGCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis