Browse Element(s) Details


Os.51670.1.S1_a_at

Description gb:AY180331.1
DB_XREF= gi:34391856
TID=Os.51670.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51670 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA helicase RecQsim mRNA, complete cds, alternatively spliced.
PROD=putative DNA helicase RecQsim
FL= gb:AY180331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0581011/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed
LOC_Os05g05800Os.9021.2.S1_at11/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05800Os.10149.1.S1_x_at1/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0003678molecular_functionDNA helicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51670.1.S1_a_at--558--9391Chr05:2884829..2884853 (25 bp)
TCGTGTTTTAATCCAGTATCCTGAG
LOC_Os05g05810
Os.51670.1.S1_a_at--484--10151Chr05:2884813..2884837 (25 bp)
TATCCTGAGGTGACAGAGGCCGGAC
LOC_Os05g05810
Os.51670.1.S1_a_at--120--6211Chr05:2884798..2884822 (25 bp)
GAGGCCGGACTGAACTTTTTGAGTA
LOC_Os05g05810
Os.51670.1.S1_a_at--854--5231Chr05:2884747..2884771 (25 bp)
GAATACCTTAATGCTGCTATGCTAT
LOC_Os05g05810
Os.51670.1.S1_a_at--368--7831Chr05:2884721..2884745 (25 bp)
GGTAATGAATGACCCAAAACCTATT
LOC_Os05g05810
Os.51670.1.S1_a_at--534--2431Chr05:2884706..2884730 (25 bp)
AAAACCTATTTCTACATCTTCCGAG
LOC_Os05g05810
Os.51670.1.S1_a_at--922--8151Chr05:2884609..2884633 (25 bp)
GGAAAGAGGCATTCTCGGAGCCACT
LOC_Os05g05810
Os.51670.1.S1_a_at--503--9851Chr05:2884583..2884607 (25 bp)
TACAGGTTTCACCACTGCAAGACAG
LOC_Os05g05810
Os.51670.1.S1_a_at--797--3731Chr05:2884475..2884499 (25 bp)
CTAAGCCTGTTACTACTTGTTTGGT
LOC_Os05g05810
Os.51670.1.S1_a_at--257--1551Chr05:2884447..2884471 (25 bp)
AGCTTGATTTACACAGCTTCTGTGG
LOC_Os05g05810
Os.51670.1.S1_a_at--740--4911Chr05:2884432..2884456 (25 bp)
GCTTCTGTGGTTATTTGCTGCAATT
LOC_Os05g05810
Target Sequence 
TCGTGTTTTAATCCAGTATCCTGAGGTGACAGAGGCCGGACTGAACTTTTTGAGTATGCAATCAGAAGAGGAAGGTTTAT
ATGAATACCTTAATGCTGCTATGCTATTGGTAATGAATGACCCAAAACCTATTTCTACATCTTCCGAGTGGGGCAGGGGT
TGGGCAGATCCTGCGATACGCCGCCAGCGTNTAGCAGGCAAGAAAATGGGGAGAAGAAAAGGAAAGAGGCATTCTCGGAG
CCACTNTACAGGTTTCACCACTGCAAGACAGAGATTAGCTGAAATACTCTCAAAACGCAGAAGATAATACAGAAACTATT
GAGATGCTGGGATAGCGGGATGAAAATTATTCATCTAAGCCTGTTACTACTTGTTTGGTTTTAGCTTGATTTACACAGCT
TCTGTGGTTATTTGCTGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51670.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis