Browse Element(s) Details


Os.22820.1.A1_at

Description gb:BI305532
DB_XREF= gi:14980854
DB_XREF=NL_0_G13
CLONE=NL_0_G13
TID=Os.22820.1
CNT=8
FEA=EST
TIER=Stack
STK=6
UG=Os.22820 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0715011/11expressed protein
LOC_Os12g381105/11Importin-beta N-terminal domain containing protein, expressed
LOC_Os05g057801/11Chromatin remodelling complex ATPase chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07120Os.50880.1.S1_a_at11/119+3455030..3466785DNA-directed RNA polymerase 1, mitochondrial precursor, putative, expressed
LOC_Os09g07120Os.50880.2.S1_x_at10/119+3455030..3466785DNA-directed RNA polymerase 1, mitochondrial precursor, putative, expressed
LOC_Os09g07120OsAffx.31428.1.S1_s_at1/119+3455030..3466785DNA-directed RNA polymerase 1, mitochondrial precursor, putative, expressed
LOC_Os09g07130NANA9+3481721..3484685retrotransposon protein, putative, unclassified
LOC_Os09g07140NANA9+3485176..3487666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07150Os.56154.1.S1_s_at11/119+3489062..3491745expressed protein
LOC_Os09g07150Os.22820.1.A1_at11/119+3489062..3491745expressed protein
LOC_Os09g07160Os.5665.1.S1_at11/119+3499534..3504050expressed protein
LOC_Os09g07170OsAffx.12204.1.S1_at2/119+3508853..3517481retrotransposon protein, putative, unclassified
LOC_Os09g07170OsAffx.448.1.S1_x_at1/119+3508853..3517481retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0030089cellular_componentphycobilisome
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0008565molecular_functionprotein transporter activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22820.1.A1_at--494--10312Chr12:23369624..23369648 (25 bp)
TTTCTGGCTATGAACTGCTTCGTGC
LOC_Os12g38110
Os.22820.1.A1_at--160--10631Chr09:3489421..3489445 (25 bp)
TTCGTGCCAAAATTCCTGCCTCTGT
LOC_Os09g07150
Os.22820.1.A1_at--526--92Chr05:2853189..2853215 (23 bp)
ATTCCTGCCTCTGTTTAGCTGTAAT
LOC_Os05g05780
Os.22820.1.A1_at--724--7471Chr09:3489378..3489402 (25 bp)
GTGTGTGTAACCCTAGCAGTCTAGC
LOC_Os09g07150
Os.22820.1.A1_at--710--3592Chr12:23369729..23369753 (25 bp)
CATTCATGCTGTTACCTTTTCAGTA
LOC_Os12g38110
Os.22820.1.A1_at--779--7631Chr09:3489275..3489299 (25 bp)
GGGACCAAGCTAGTCCTGTTTTATG
LOC_Os09g07150
Os.22820.1.A1_at--1035--7251Chr09:3489263..3489287 (25 bp)
GTCCTGTTTTATGTAGCAGCTCCTA
LOC_Os09g07150
Os.22820.1.A1_at--1085--5052Chr12:23369811..23369835 (25 bp)
GCAGCTCCTATTTTCATAGCTTCCA
LOC_Os12g38110
Os.22820.1.A1_at--1028--292Chr12:23369826..23369850 (25 bp)
ATAGCTTCCAGCTGATTCCTGCTAG
LOC_Os12g38110
Os.22820.1.A1_at--608--1612Chr12:23369835..23369859 (25 bp)
AGCTGATTCCTGCTAGTATAATACT
LOC_Os12g38110
Os.22820.1.A1_at--917--3491Chr09:3489177..3489201 (25 bp)
CATGGACTGTTTTATTGTGGCTGGC
LOC_Os09g07150
Target Sequence 
TTTCTGGCTATGAACTGCTTCGTGCCAAAATTCCTGCCTCTGTTTAGCTGTAATTTGAACTGTGTGTGTAACCCTAGCAG
TCTAGCCCCCTAGAACTCATTCATTCATTCATGCTGTTACCTTTTCAGTAAGAGCTAAAGCTAATTCCTAAATTTGTCCG
GGGACCAAGCTAGTCCTGTTTTATGTAGCAGCTCCTATTTTCATAGCTTCCAGCTGATTCCTGCTAGTATAATACTATAA
TTTATAATATGAATATGCCATGGACTGTTTTATTGTGGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22820.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis