Browse Element(s) Details


Os.56154.1.S1_s_at

Description gb:AK109459.1
DB_XREF= gi:32994668
TID=Os.56154.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C04, full insert sequence.
FL= gb:AK109459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0715011/11expressed protein
LOC_Os12g381104/11Importin-beta N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07120Os.50880.1.S1_a_at11/119+3455030..3466785DNA-directed RNA polymerase 1, mitochondrial precursor, putative, expressed
LOC_Os09g07120Os.50880.2.S1_x_at10/119+3455030..3466785DNA-directed RNA polymerase 1, mitochondrial precursor, putative, expressed
LOC_Os09g07120OsAffx.31428.1.S1_s_at1/119+3455030..3466785DNA-directed RNA polymerase 1, mitochondrial precursor, putative, expressed
LOC_Os09g07130NANA9+3481721..3484685retrotransposon protein, putative, unclassified
LOC_Os09g07140NANA9+3485176..3487666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07150Os.56154.1.S1_s_at11/119+3489062..3491745expressed protein
LOC_Os09g07150Os.22820.1.A1_at11/119+3489062..3491745expressed protein
LOC_Os09g07160Os.5665.1.S1_at11/119+3499534..3504050expressed protein
LOC_Os09g07170OsAffx.12204.1.S1_at2/119+3508853..3517481retrotransposon protein, putative, unclassified
LOC_Os09g07170OsAffx.448.1.S1_x_at1/119+3508853..3517481retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0030089cellular_componentphycobilisome
GO:0008565molecular_functionprotein transporter activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56154.1.S1_s_at--691--1171Chr09:3489729..3489753 (25 bp)
AGTACACTAGACAAGTCCCTTCACT
LOC_Os09g07150
Os.56154.1.S1_s_at--871--451Chr09:3489702..3489726 (25 bp)
ATCTCCCTCACTCTTAAATCTCAAT
LOC_Os09g07150
Os.56154.1.S1_s_at--261--3091Chr09:3489647..3489671 (25 bp)
CAAAACCCTGGTCTCCGGAGCGGAG
LOC_Os09g07150
Os.56154.1.S1_s_at--312--3811Chr09:3489635..3489659 (25 bp)
CTCCGGAGCGGAGTTGCTAGATCTG
LOC_Os09g07150
Os.56154.1.S1_s_at--388--6812Chr12:23369473..23369493 (21 bp)
GTTTTACTCGTGTGAGAGCTCGTGT
LOC_Os12g38110
Os.56154.1.S1_s_at--565--92Chr12:23369502..23369526 (25 bp)
ATTCCTCCGCGTGGGAAGCTTAGAT
LOC_Os12g38110
Os.56154.1.S1_s_at--619--6551Chr09:3489537..3489561 (25 bp)
GATTAGTGTGTGGTCTAGTCGCGTC
LOC_Os09g07150
Os.56154.1.S1_s_at--390--7151Chr09:3489525..3489549 (25 bp)
GTCTAGTCGCGTCTCGCAGATACGA
LOC_Os09g07150
Os.56154.1.S1_s_at--147--9351Chr09:3489512..3489536 (25 bp)
TCGCAGATACGATCGAACACTACGA
LOC_Os09g07150
Os.56154.1.S1_s_at--1076--6312Chr12:23369573..23369597 (25 bp)
GATGAATTCGTGTTTCTGGTGTTCC
LOC_Os12g38110
Os.56154.1.S1_s_at--4--6852Chr12:23369584..23369608 (24 bp)
GTTTCTGGTGTTCCTTTACGGATGA
LOC_Os12g38110
Target Sequence 
AGTACACTAGACAAGTCCCTTCACTTCATCTCCCTCACTCTTAAATCTCAATCTCCCCCAACCCCCGCGACGTAAGTGAG
GTCAAAACCCTGGTCTCCGGAGCGGAGTTGCTAGATCTGGGGGGTTTGATTTTATTTGTTTTACTCGTGTGAGAGCTCGT
GTAGTTGGCGATTCCTCCGCGTGGGAAGCTTAGATTAGTGTGTGGTCTAGTCGCGTCTCGCAGATACGATCGAACACTAC
GATGAATTCGTGTTTCTGGTGTTCCTTTACGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56154.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis