Browse Element(s) Details


Os.5665.1.S1_at

Description gb:AK121936.1
DB_XREF= gi:37991559
TID=Os.5665.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107C02, full insert sequence.
FL= gb:AK121936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0716011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07130NANA9+3481721..3484685retrotransposon protein, putative, unclassified
LOC_Os09g07140NANA9+3485176..3487666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07150Os.56154.1.S1_s_at11/119+3489062..3491745expressed protein
LOC_Os09g07150Os.22820.1.A1_at11/119+3489062..3491745expressed protein
LOC_Os09g07160Os.5665.1.S1_at11/119+3499534..3504050expressed protein
LOC_Os09g07170OsAffx.12204.1.S1_at2/119+3508853..3517481retrotransposon protein, putative, unclassified
LOC_Os09g07170OsAffx.448.1.S1_x_at1/119+3508853..3517481retrotransposon protein, putative, unclassified
LOC_Os09g07180OsAffx.17587.1.S1_at11/119+3517951..3521519retrotransposon, putative, centromere-specific
LOC_Os09g07180Os.24648.1.A1_at1/119+3517951..3521519retrotransposon, putative, centromere-specific
LOC_Os09g07190NANA9+3522247..3523032retrotransposon protein, putative, unclassified
LOC_Os09g07200OsAffx.29742.4.S1_x_at11/119+3524023..3525519transposon protein, putative, unclassified
LOC_Os09g07210OsAffx.29742.5.S1_at11/119+3528931..3529529hypothetical protein
LOC_Os09g07210OsAffx.29742.5.S1_s_at11/119+3528931..3529529hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5665.1.S1_at--710--8311Chr09:3500076..3500100 (25 bp)
GGCTAATTACAGCAACGTTTCCATT
LOC_Os09g07160
Os.5665.1.S1_at--923--10331Chr09:3500009..3500033 (25 bp)
TTTAGCACGTGTTTACTGGGCCGTA
LOC_Os09g07160
Os.5665.1.S1_at--940--1311Chr09:3499985..3500009 (25 bp)
AGAGGCCACCATACAAGTTATCATA
LOC_Os09g07160
Os.5665.1.S1_at--232--451Chr09:3499932..3499956 (25 bp)
ATCTCAGTTCCTTGTGTTTTGTTAG
LOC_Os09g07160
Os.5665.1.S1_at--254--5591Chr09:3499894..3499918 (25 bp)
GAAATTCAACTCTTCAATGGCCCTA
LOC_Os09g07160
Os.5665.1.S1_at--25--2971Chr09:3499879..3499903 (25 bp)
AATGGCCCTATTGGTGAGTCATGTG
LOC_Os09g07160
Os.5665.1.S1_at--922--251Chr09:3499844..3499868 (25 bp)
ATATGTGGTTGCTGTATCCTTGGAC
LOC_Os09g07160
Os.5665.1.S1_at--205--10851Chr09:3499711..3499735 (25 bp)
TTGGGTGAGCTTGCATCTATCTCGA
LOC_Os09g07160
Os.5665.1.S1_at--424--9551Chr09:3499696..3499720 (25 bp)
TCTATCTCGATGAAGGTGACCTGGT
LOC_Os09g07160
Os.5665.1.S1_at--1055--5811Chr09:3499679..3499703 (25 bp)
GACCTGGTCAACTTTACTAGATTAA
LOC_Os09g07160
Os.5665.1.S1_at--416--8191Chr09:3499648..3499672 (25 bp)
GGAATGTGTTTCTTACCAACCGTCA
LOC_Os09g07160
Target Sequence 
GGCTAATTACAGCAACGTTTCCATTCACAAAACGCATTAATGGTGATTGTGGTGCAGTTGATATCACTTTAGCACGTGTT
TACTGGGCCGTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTCAGTTCCTTGTG
TTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATTGGTGAGTCATGTGGCTTAAGAAGATATGTGG
TTGCTGTATCCTTGGACACTTGGATGCATTTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTAT
TGTTCTTTCAAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCGATGAAGGTGAC
CTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis