Browse Element(s) Details


OsAffx.17587.1.S1_at

Description tigr:9637.m00475
TID=OsAffx.17587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0718011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07160Os.5665.1.S1_at11/119+3499534..3504050expressed protein
LOC_Os09g07170OsAffx.12204.1.S1_at2/119+3508853..3517481retrotransposon protein, putative, unclassified
LOC_Os09g07170OsAffx.448.1.S1_x_at1/119+3508853..3517481retrotransposon protein, putative, unclassified
LOC_Os09g07180OsAffx.17587.1.S1_at11/119+3517951..3521519retrotransposon, putative, centromere-specific
LOC_Os09g07180Os.24648.1.A1_at1/119+3517951..3521519retrotransposon, putative, centromere-specific
LOC_Os09g07190NANA9+3522247..3523032retrotransposon protein, putative, unclassified
LOC_Os09g07200OsAffx.29742.4.S1_x_at11/119+3524023..3525519transposon protein, putative, unclassified
LOC_Os09g07210OsAffx.29742.5.S1_at11/119+3528931..3529529hypothetical protein
LOC_Os09g07210OsAffx.29742.5.S1_s_at11/119+3528931..3529529hypothetical protein
LOC_Os09g07220OsAffx.5954.1.S1_x_at11/119+3531749..3533473Zinc knuckle family protein
LOC_Os09g07220OsAffx.5954.3.S1_x_at3/119+3531749..3533473Zinc knuckle family protein
LOC_Os09g07220OsAffx.5954.2.S1_at1/119+3531749..3533473Zinc knuckle family protein
LOC_Os09g07230OsAffx.5954.5.S1_x_at8/119+3534759..3542841retrotransposon protein, putative, unclassified
LOC_Os09g07230OsAffx.29791.1.S1_x_at4/119+3534759..3542841retrotransposon protein, putative, unclassified
LOC_Os09g07230OsAffx.29791.2.S1_s_at3/119+3534759..3542841retrotransposon protein, putative, unclassified
LOC_Os09g07230OsAffx.29791.2.S1_x_at2/119+3534759..3542841retrotransposon protein, putative, unclassified
LOC_Os09g07230Os.47114.1.S1_x_at2/119+3534759..3542841retrotransposon protein, putative, unclassified
LOC_Os09g07230OsAffx.29791.1.S1_at1/119+3534759..3542841retrotransposon protein, putative, unclassified
LOC_Os09g07230OsAffx.576.1.A1_at1/119+3534759..3542841retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17587.1.S1_at--369--2392Chr09:3519505..3519529 (25 bp)
AAACTCCATTGGGATGCTTGGCCGA
LOC_Os09g07180
OsAffx.17587.1.S1_at--837--9051Chr09:3519491..3519515 (25 bp)
TGCTTGGCCGAGTTGGTGTACGTCA
LOC_Os09g07180
OsAffx.17587.1.S1_at--945--6011Chr09:3519276..3519300 (25 bp)
GAGAGATGCCAACTTCTCGACAAGA
LOC_Os09g07180
OsAffx.17587.1.S1_at--1068--4391Chr09:3519269..3519293 (25 bp)
GCCAACTTCTCGACAAGATGCATAT
LOC_Os09g07180
OsAffx.17587.1.S1_at--477--5611Chr09:3518910..3519282 (25 bp)
GACAAGATGCATATGAGTGGTCTAA
LOC_Os09g07180
OsAffx.17587.1.S1_at--190--3291Chr09:3518851..3518875 (25 bp)
CAAAGGGCTTAGTTCTGAAGTTCAG
LOC_Os09g07180
OsAffx.17587.1.S1_at--582--9451Chr09:3518631..3518862 (25 bp)
TCTGAAGTTCAGGTAATTCATCACA
LOC_Os09g07180
OsAffx.17587.1.S1_at--520--7831Chr09:3518620..3518644 (25 bp)
GGTAATTCATCACATTCAACAAAAG
LOC_Os09g07180
OsAffx.17587.1.S1_at--774--9591Chr09:3518614..3518638 (25 bp)
TCATCACATTCAACAAAAGAGGGAG
LOC_Os09g07180
OsAffx.17587.1.S1_at--640--9671Chr09:3518089..3518113 (25 bp)
TCAGCCACCTGCTACTGTATTGAAT
LOC_Os09g07180
OsAffx.17587.1.S1_at--539--1691Chr09:3518087..3518111 (25 bp)
AGCCACCTGCTACTGTATTGAATTC
LOC_Os09g07180
Target Sequence 
AAACTCCATTGGGATGCTTGGCCGAGTTGGTGTACGTCACCATTCCGCTTGCTTTGGATTGCGCAAGGGGATACGAGATG
GTCATGCTCAACATCGGCTTCTTCACCATCGACGAGAGATGCCAACTTCTCGACAAGATGCATATGAGTGGTCTAAAAGA
ATGCAATGAAAACACAATGCGTAGATTTTTCAAAGGGCTTAGTTCTGAAGTTCAGGTAATTCATCACATTCAACAAAAGA
GGGAGAATGGTGTACTTGAGAAGAAAGAGGATGAAGCACCTGTGGTGTCTGAAGAAAGTTTGCAAGGAGAAGGGGAGGAT
GATGTGACCATGGCTACCATTGATACAACCATTGCTCACATCATGGATGAACAAGATGATAACAAGATCAAGTCCTCCAA
TTATTGGAATCCAATTCAGCCACCTGCTACTGTATTGAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis