Browse Element(s) Details


OsAffx.29791.2.S1_s_at

Description tigr:9637.m00803
TID=OsAffx.29791.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1043011/11hypothetical protein
LOC_Os09g1042011/11expressed protein
LOC_Os09g072303/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10370OsAffx.6225.1.S1_at9/119+5677215..5678699hypothetical protein
LOC_Os09g10380OsAffx.17632.1.S1_at11/119+5680007..5680749transposon protein, putative, unclassified, expressed
LOC_Os09g10390OsAffx.5954.1.S1_x_at2/119+5683077..5685877hypothetical protein
LOC_Os09g10390OsAffx.5954.2.S1_at1/119+5683077..5685877hypothetical protein
LOC_Os09g10400NANA9+5686319..5687023transposon protein, putative, unclassified
LOC_Os09g10410OsAffx.5954.5.S1_x_at5/119+5689795..5691618retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10420OsAffx.29791.1.S1_at11/119+5695108..5696468expressed protein
LOC_Os09g10420OsAffx.29791.2.S1_s_at11/119+5695108..5696468expressed protein
LOC_Os09g10420OsAffx.29791.1.S1_x_at11/119+5695108..5696468expressed protein
LOC_Os09g10420OsAffx.29791.2.S1_x_at1/119+5695108..5696468expressed protein
LOC_Os09g10430OsAffx.29791.2.S1_x_at11/119+5696737..5698278hypothetical protein
LOC_Os09g10430OsAffx.29791.2.S1_s_at11/119+5696737..5698278hypothetical protein
LOC_Os09g10430OsAffx.29791.1.S1_x_at3/119+5696737..5698278hypothetical protein
LOC_Os09g10440NANA9+5705013..5706173hypothetical protein
LOC_Os09g10450OsAffx.22385.1.S1_x_at4/119+5708713..5711556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10450OsAffx.20329.1.S1_at1/119+5708713..5711556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10460NANA9+5715356..5716923transposon protein, putative, unclassified
LOC_Os09g10470NANA9+5719176..5723690retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29791.2.S1_s_at--607--7993Chr09:5697791..5697815 (25 bp)
GGATGATTGAACATGTCACTCACCT
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--382--6293Chr09:5697792..5697816 (25 bp)
GATGATTGAACATGTCACTCACCTT
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--484--2093Chr09:5697837..5697861 (25 bp)
ACATACCGCTCTTTCCTTGCGCTTG
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--450--4112Chr09:5697843..5697867 (25 bp)
CGCTCTTTCCTTGCGCTTGCCCAAG
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--1132--2832Chr09:5698063..5698087 (25 bp)
AAGTACCTCAAGGCGCGGTATCATG
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--46--3753Chr09:5698069..5698093 (25 bp)
CTCAAGGCGCGGTATCATGAGGACC
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--791--9733Chr09:5698070..5698094 (25 bp)
TCAAGGCGCGGTATCATGAGGACCA
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--1106--3193Chr09:5698071..5698095 (25 bp)
CAAGGCGCGGTATCATGAGGACCAC
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--578--2953Chr09:5698072..5698096 (25 bp)
AAGGCGCGGTATCATGAGGACCACC
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--293--893Chr09:5698073..5698097 (25 bp)
AGGCGCGGTATCATGAGGACCACCA
LOC_Os09g10430
OsAffx.29791.2.S1_s_at--640--8192Chr09:5698155..5698179 (25 bp)
GGAAGAGCTAGAGGATCCATTTGCT
LOC_Os09g10430
Target Sequence 
GGATGATTGAACATGTCACTCACCTTCAGTTTGTGTGCGAGGAACCACATACCGCTCTTTCCTTGCGCTTGCCCAAGCAC
AGGTCTGTGCCTCGGGACATCCCCTCCACATCCTCTCAGCCGCCTTCTGCTTCTGAGCGTCCTTCCTCTATGGCTCGTCA
TGAGCCGTCTCCCTTATTCCGCATTTTGCGGACTATTTTTAGTCTTTGCTCCGCGGAGGCTAAAAAGAACCGCCGATTAC
GGAATTTGGTGAAGAAAACGGCTAGTGACGTCAAGTACCTCAAGGCGCGGTATCATGAGGACCACCACATTGATATCCCT
CCTTCCCCTCCGGGTTTCGAGGCCGAGCCCGATGAGCCCGAGGAGGAAGAGCTAGAGGATCCATTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29791.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis