Browse Element(s) Details


Os.2916.1.S1_at

Description gb:AK100732.1
DB_XREF= gi:32985941
TID=Os.2916.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.2916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117L05, full insert sequence.
FL= gb:AK100732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0578011/11Chromatin remodelling complex ATPase chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed
LOC_Os05g05800Os.9021.2.S1_at11/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05800Os.10149.1.S1_x_at1/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2916.1.S1_at--773--5331Chr05:2861692..2861716 (25 bp)
GAAGTCTAGAACAACCCAAGAGCTA
LOC_Os05g05780
Os.2916.1.S1_at--567--1571Chr05:2861712..2861736 (25 bp)
AGCTAGCTAGGAGGTGCGAGACCCT
LOC_Os05g05780
Os.2916.1.S1_at--1073--5991Chr05:2861729..2861753 (25 bp)
GAGACCCTCATTCGTCTAGTGGAGA
LOC_Os05g05780
Os.2916.1.S1_at--415--771Chr05:2861946..2861970 (25 bp)
ATGTCGCCAGCAAAGCGTTCTTCAT
LOC_Os05g05780
Os.2916.1.S1_at--843--6731Chr05:2861962..2861986 (25 bp)
GTTCTTCATCAAGGTCGCTCGATAC
LOC_Os05g05780
Os.2916.1.S1_at--578--2791Chr05:2862006..2862030 (25 bp)
AAGAGGAGGCGCCAGTCCTACACTG
LOC_Os05g05780
Os.2916.1.S1_at--1099--1131Chr05:2862019..2862043 (25 bp)
AGTCCTACACTGAAGCCAATGCAGG
LOC_Os05g05780
Os.2916.1.S1_at--818--7711Chr05:2862165..2862189 (25 bp)
GGGTGATCTGATTATTGTTCGTTCC
LOC_Os05g05780
Os.2916.1.S1_at--283--4211Chr05:2862193..2862217 (25 bp)
CCCCATATGCATTTAGGGAGCTCAT
LOC_Os05g05780
Os.2916.1.S1_at--960--6471Chr05:2862253..2862277 (25 bp)
GATACATCCCAATTGTCTAGCAGTA
LOC_Os05g05780
Os.2916.1.S1_at--289--6251Chr05:2862327..2862351 (25 bp)
GATGGTTAGCTTGTATACCGGTTAA
LOC_Os05g05780
Target Sequence 
GAAGTCTAGAACAACCCAAGAGCTAGCTAGGAGGTGCGAGACCCTCATTCGTCTAGTGGAGAAGGAGAACCAAGAATATG
ATGAGCGTGAGAGATTGGCCAGGAAAGATAAGAAGAATATGTCGCCAGCAAAGCGTTCTTCATCAAGGTCGCTCGATACC
CCTCCACAAAGCTNTTCNAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCGGGAAGGAGAAGGCGAGGGTG
ATCTGATTATTGTTCGTTCCTCCCCCCATATGCATTTAGGGAGCTCATTTGGAGGTTGACATGAAACCCAAGGGNAAACC
CCAGATACATCCCAATTGTCTAGCAGTAGCTTTAGCTCAAAAAAAAAAAAAAAAAANCTAGCAGACATAACTCTAGTGAG
ATGGTTAGCTTGTATACCGGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis