Browse Element(s) Details


OsAffx.14558.1.S1_at

Description tigr:9633.m00495
TID=OsAffx.14558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g057708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed
LOC_Os05g05800Os.9021.2.S1_at11/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05800Os.10149.1.S1_x_at1/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14558.1.S1_at--764--1651Chr05:2850783..2850807 (25 bp)
AGCGCCATATTTCACGGTGTCAATG
LOC_Os05g05770
OsAffx.14558.1.S1_at--40--10191NONE
TATTTCACGGTGTCAATGTCAATAG
NONE
OsAffx.14558.1.S1_at--645--8911NONE
TGACATTGACATAGTGGGCCGAAGT
NONE
OsAffx.14558.1.S1_at--232--1031Chr05:2850831..2850854 (24 bp)
AGTGGGCCGAAGTGCCAAGGCCTAC
LOC_Os05g05770
OsAffx.14558.1.S1_at--256--3731NONE
CTACGGCGCTGAGATGAAGGGAAAA
NONE
OsAffx.14558.1.S1_at--332--3651Chr05:2851606..2851630 (25 bp)
CTTCAGCGACGCGAGGAATCGGCAA
LOC_Os05g05770
OsAffx.14558.1.S1_at--395--9671Chr05:2851608..2851632 (25 bp)
TCAGCGACGCGAGGAATCGGCAAGA
LOC_Os05g05770
OsAffx.14558.1.S1_at--663--3231Chr05:2851628..2851652 (25 bp)
CAAGAGATTGCATGTGGCGGCATAA
LOC_Os05g05770
OsAffx.14558.1.S1_at--510--7991Chr05:2851653..2851677 (25 bp)
GGATGAGATGTCTTGACCTAACCAA
LOC_Os05g05770
OsAffx.14558.1.S1_at--67--1251Chr05:2851658..2851682 (25 bp)
AGATGTCTTGACCTAACCAAACTAG
LOC_Os05g05770
OsAffx.14558.1.S1_at--375--8711Chr05:2851661..2851685 (25 bp)
TGTCTTGACCTAACCAAACTAGAAA
LOC_Os05g05770
Target Sequence 
AGCGCCATATTTCACGGTGTCAATGTCAATAGGCTTGACATTGACATAGTGGGCCGAAGTGCCAAGGCCTACGGCGCTGA
GATGAAGGGAAAAATGGAGGGAAACCCTAGCTTCAGCGACGCGAGGAATCGGCAAGAGATTGCATGTGGCGGCATAAGGA
TGAGATGTCTTGACCTAACCAAACTAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis