Browse Element(s) Details


Os.20667.1.S1_at

Description gb:AK110983.1
DB_XREF= gi:32996192
TID=Os.20667.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C11, full insert sequence.
FL= gb:AK110983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0579010/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed
LOC_Os05g05800Os.9021.2.S1_at11/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05800Os.10149.1.S1_x_at1/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20667.1.S1_at--1106--3111Chr05:2863363..2863387 (25 bp)
AATTTGCCGAGTTCGTTATACCAGC
LOC_Os05g05790
Os.20667.1.S1_at--1158--7871Chr05:2863326..2863350 (25 bp)
GGTTAGCTGCCTCAGTTACAATCAG
LOC_Os05g05790
Os.20667.1.S1_at--216--2571Chr05:2863298..2863598 (25 bp)
AACTGTCCCTGTATGCTCAGCGAGG
LOC_Os05g05790
Os.20667.1.S1_at--523--7771Chr05:2863265..2863289 (25 bp)
GGTGAACTCTAGTGCTGGAGCAGCT
LOC_Os05g05790
Os.20667.1.S1_at--90--3791Chr05:2863220..2863244 (25 bp)
CTCGGCCTCGCCTAGAAAAGAAGAA
LOC_Os05g05790
Os.20667.1.S1_at--596--2731Chr05:2863200..2863224 (25 bp)
AAGAACCTGAAGCTCGCACGAACAC
LOC_Os05g05790
Os.20667.1.S1_at--149--1491Chr05:2863165..2863189 (25 bp)
AGCAATGCTGCAACGGCGAGTTCTG
LOC_Os05g05790
Os.20667.1.S1_at--678--7091Chr05:2863115..2863139 (25 bp)
GTCACAGTTTTGGTTCATCTGAGCT
LOC_Os05g05790
Os.20667.1.S1_at--868--1431Chr05:2863077..2863101 (25 bp)
AGAACTTAACTCTCAGCTGCATCTC
LOC_Os05g05790
Os.20667.1.S1_at--1108--451Chr05:2862961..2862985 (25 bp)
ATCTCTCGCGATATCTGAACCTGTT
LOC_Os05g05790
Os.20667.1.S1_at--1150--7911NONE
GGATTTTTTATGTACCACACCTTAT
NONE
Target Sequence 
AATTTGCCGAGTTCGTTATACCAGCAACGGCCTCCTTGGTTAGCTGCCTCAGTTACAATCAGAACAACTGTCCCTGTATG
CTCAGCGAGGCCAAATGTGGTGAACTCTAGTGCTGGAGCAGCTCAACCTGCTGTTCAGATCCTCTCGGCCTCGCCTAGAA
AAGAAGAACCTGAAGCTCGCACGAACACCAGTGACACAAGCAATGCTGCAACGGCGAGTTCTGAGCTCAATAAGCTCCAT
ATTTGAAAGTCACAGTTTTGGTTCATCTGAGCTTTAGTCAGGGCTGAGAACTTAACTCTCAGCTGCATCTCAGTTTTGAT
TGTTTCTNTTTCCNTTTCATTTTTTTTATCTCCNTTGGGTATTTAGCTAGATAGACATAACTATATGAAGAGTTGGAGAN
GCGGGCATCTCTCGCGATATCTGAACCTGTTGGATTTTTTATGTACCACACCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis